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Zinc in PDB 6z0d: Trna-Guanine Transglycosylase (Tgt) H333F Mutant Crystallised at pH 5.5

Enzymatic activity of Trna-Guanine Transglycosylase (Tgt) H333F Mutant Crystallised at pH 5.5

All present enzymatic activity of Trna-Guanine Transglycosylase (Tgt) H333F Mutant Crystallised at pH 5.5:
2.4.2.29;

Protein crystallography data

The structure of Trna-Guanine Transglycosylase (Tgt) H333F Mutant Crystallised at pH 5.5, PDB code: 6z0d was solved by A.Nguyen, A.Heine, G.Klebe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 1.65
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 90.791, 65.332, 70.574, 90.00, 96.30, 90.00
R / Rfree (%) 16.4 / 19.4

Zinc Binding Sites:

The binding sites of Zinc atom in the Trna-Guanine Transglycosylase (Tgt) H333F Mutant Crystallised at pH 5.5 (pdb code 6z0d). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Trna-Guanine Transglycosylase (Tgt) H333F Mutant Crystallised at pH 5.5, PDB code: 6z0d:

Zinc binding site 1 out of 1 in 6z0d

Go back to Zinc Binding Sites List in 6z0d
Zinc binding site 1 out of 1 in the Trna-Guanine Transglycosylase (Tgt) H333F Mutant Crystallised at pH 5.5


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Trna-Guanine Transglycosylase (Tgt) H333F Mutant Crystallised at pH 5.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn402

b:16.6
occ:1.00
ND1 A:HIS349 2.1 14.4 1.0
SG A:CYS318 2.3 15.1 1.0
SG A:CYS323 2.3 14.4 1.0
SG A:CYS320 2.3 15.3 1.0
CE1 A:HIS349 3.0 15.6 1.0
CG A:HIS349 3.3 13.9 1.0
CB A:CYS318 3.3 15.7 1.0
CB A:CYS323 3.3 13.2 1.0
CB A:CYS320 3.4 12.2 1.0
CB A:HIS349 3.7 13.8 1.0
N A:CYS323 3.9 14.6 1.0
CA A:HIS349 4.1 11.7 1.0
N A:CYS320 4.1 15.7 1.0
NE2 A:HIS349 4.2 13.0 1.0
CA A:CYS320 4.2 13.9 1.0
CA A:CYS323 4.2 13.0 1.0
CD2 A:HIS349 4.3 15.1 1.0
O A:HIS349 4.5 12.8 1.0
CA A:CYS318 4.6 16.4 1.0
O A:CYS320 4.6 16.3 1.0
C A:CYS320 4.6 15.8 1.0
C A:CYS318 4.7 20.1 1.0
C A:HIS349 4.8 12.5 1.0
CB A:VAL322 4.8 11.7 1.0
O A:CYS318 4.8 18.2 1.0
C A:VAL322 4.9 17.2 1.0

Reference:

A.Nguyen, A.Heine, G.Klebe. Mutation Study on Trna-Guanine Transglycosylase For Catalysis Testing To Be Published.
Page generated: Tue Oct 29 15:21:43 2024

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