Atomistry » Zinc » PDB 6tlx-6twm » 6tvn
Atomistry »
  Zinc »
    PDB 6tlx-6twm »
      6tvn »

Zinc in PDB 6tvn: Crystal Structure of 5-Bromoindoline-2,3-Dione Covalently Bound to the pH Domain of Bruton'S Tyrosine Kinase

Enzymatic activity of Crystal Structure of 5-Bromoindoline-2,3-Dione Covalently Bound to the pH Domain of Bruton'S Tyrosine Kinase

All present enzymatic activity of Crystal Structure of 5-Bromoindoline-2,3-Dione Covalently Bound to the pH Domain of Bruton'S Tyrosine Kinase:
2.7.10.2;

Protein crystallography data

The structure of Crystal Structure of 5-Bromoindoline-2,3-Dione Covalently Bound to the pH Domain of Bruton'S Tyrosine Kinase, PDB code: 6tvn was solved by P.Brear, J.Wagstaff, M.Hyvonen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 66.45 / 2.31
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 67.775, 65.400, 79.752, 90.00, 101.34, 90.00
R / Rfree (%) 22.5 / 25.7

Other elements in 6tvn:

The structure of Crystal Structure of 5-Bromoindoline-2,3-Dione Covalently Bound to the pH Domain of Bruton'S Tyrosine Kinase also contains other interesting chemical elements:

Bromine (Br) 4 atoms
Magnesium (Mg) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of 5-Bromoindoline-2,3-Dione Covalently Bound to the pH Domain of Bruton'S Tyrosine Kinase (pdb code 6tvn). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Crystal Structure of 5-Bromoindoline-2,3-Dione Covalently Bound to the pH Domain of Bruton'S Tyrosine Kinase, PDB code: 6tvn:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 6tvn

Go back to Zinc Binding Sites List in 6tvn
Zinc binding site 1 out of 4 in the Crystal Structure of 5-Bromoindoline-2,3-Dione Covalently Bound to the pH Domain of Bruton'S Tyrosine Kinase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of 5-Bromoindoline-2,3-Dione Covalently Bound to the pH Domain of Bruton'S Tyrosine Kinase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn202

b:47.0
occ:1.00
 ND1 A:HIS143 2.3 44.5 1.0
SG A:CYS154 2.5 57.6 1.0
SG A:CYS165 2.5 57.9 1.0
SG A:CYS155 2.5 56.2 1.0
CB A:CYS165 2.9 54.6 1.0
CE1 A:HIS143 3.2 44.6 1.0
CB A:CYS155 3.2 52.8 1.0
CG A:HIS143 3.2 43.0 1.0
CB A:HIS143 3.5 39.3 1.0
CB A:CYS154 3.7 53.3 1.0
N A:CYS155 3.7 53.6 1.0
CA A:HIS143 3.7 39.3 1.0
N A:CYS165 3.8 56.2 1.0
CA A:CYS165 4.0 55.2 1.0
CA A:CYS155 4.1 53.3 1.0
C A:CYS154 4.2 56.3 1.0
CB A:TYR152 4.2 45.7 1.0
NE2 A:HIS143 4.3 45.3 1.0
CD2 A:HIS143 4.3 46.0 1.0
CA A:CYS154 4.4 52.4 1.0
CD A:PRO144 4.5 44.7 1.0
CG A:TYR152 4.5 46.0 1.0
N A:CYS154 4.7 51.5 1.0
C A:HIS143 4.7 46.6 1.0
N A:HIS143 4.8 39.7 1.0
O A:TYR142 4.8 43.9 1.0
C A:GLY164 4.9 59.1 1.0
CD1 A:TYR152 4.9 46.8 1.0
O A:CYS154 4.9 55.7 1.0
N A:PRO144 4.9 43.6 1.0
C A:CYS165 4.9 62.8 1.0

Zinc binding site 2 out of 4 in 6tvn

Go back to Zinc Binding Sites List in 6tvn
Zinc binding site 2 out of 4 in the Crystal Structure of 5-Bromoindoline-2,3-Dione Covalently Bound to the pH Domain of Bruton'S Tyrosine Kinase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of 5-Bromoindoline-2,3-Dione Covalently Bound to the pH Domain of Bruton'S Tyrosine Kinase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn202

b:47.5
occ:1.00
 ND1 B:HIS143 2.2 45.2 1.0
SG B:CYS154 2.5 64.4 1.0
SG B:CYS155 2.5 61.7 1.0
SG B:CYS165 2.5 64.6 1.0
CE1 B:HIS143 3.1 45.1 1.0
CB B:CYS165 3.2 60.8 1.0
CG B:HIS143 3.2 44.0 1.0
CB B:CYS155 3.3 58.2 1.0
CB B:HIS143 3.5 40.8 1.0
CB B:CYS154 3.7 59.8 1.0
N B:CYS155 3.7 59.2 1.0
CA B:HIS143 3.8 40.9 1.0
N B:CYS165 3.9 60.8 1.0
CB B:TYR152 4.1 43.2 1.0
CA B:CYS155 4.2 58.5 1.0
NE2 B:HIS143 4.2 45.5 1.0
CA B:CYS165 4.2 60.2 1.0
CD2 B:HIS143 4.3 45.6 1.0
C B:CYS154 4.3 62.3 1.0
CD B:PRO144 4.4 40.0 1.0
CG B:TYR152 4.4 40.9 1.0
CA B:CYS154 4.5 58.6 1.0
N B:HIS143 4.8 42.6 1.0
N B:CYS154 4.8 56.8 1.0
CD1 B:TYR152 4.8 41.2 1.0
C B:HIS143 4.8 45.0 1.0
O B:TYR142 4.9 46.0 1.0
CD2 B:TYR152 4.9 41.5 1.0
NE2 B:GLN157 5.0 60.3 1.0
C B:GLY164 5.0 62.5 1.0
N B:PRO144 5.0 40.5 1.0

Zinc binding site 3 out of 4 in 6tvn

Go back to Zinc Binding Sites List in 6tvn
Zinc binding site 3 out of 4 in the Crystal Structure of 5-Bromoindoline-2,3-Dione Covalently Bound to the pH Domain of Bruton'S Tyrosine Kinase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of 5-Bromoindoline-2,3-Dione Covalently Bound to the pH Domain of Bruton'S Tyrosine Kinase within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn202

b:52.4
occ:1.00
 ND1 C:HIS143 2.2 45.3 1.0
SG C:CYS165 2.4 56.2 1.0
SG C:CYS154 2.5 56.8 1.0
SG C:CYS155 2.5 54.3 1.0
CB C:CYS155 3.1 51.7 1.0
CB C:CYS165 3.1 52.7 1.0
CE1 C:HIS143 3.2 44.4 1.0
CG C:HIS143 3.2 43.6 1.0
CB C:HIS143 3.5 40.6 1.0
CB C:CYS154 3.6 53.0 1.0
N C:CYS155 3.6 53.1 1.0
CA C:HIS143 3.7 41.1 1.0
N C:CYS165 3.8 53.6 1.0
CA C:CYS155 4.0 53.0 1.0
C C:CYS154 4.0 56.3 1.0
CB C:TYR152 4.1 53.2 1.0
CA C:CYS165 4.1 52.8 1.0
NE2 C:HIS143 4.3 44.8 1.0
CA C:CYS154 4.3 53.2 1.0
CD2 C:HIS143 4.3 44.6 1.0
CG C:TYR152 4.4 53.0 1.0
CD C:PRO144 4.5 43.9 1.0
O C:CYS154 4.7 55.9 1.0
N C:CYS154 4.7 54.1 1.0
C C:HIS143 4.7 48.2 1.0
N C:HIS143 4.8 42.4 1.0
CD1 C:TYR152 4.8 54.7 1.0
CD2 C:TYR152 4.8 53.2 1.0
C C:GLY164 4.9 57.1 1.0
N C:PRO144 5.0 44.0 1.0
O C:TYR142 5.0 46.2 1.0

Zinc binding site 4 out of 4 in 6tvn

Go back to Zinc Binding Sites List in 6tvn
Zinc binding site 4 out of 4 in the Crystal Structure of 5-Bromoindoline-2,3-Dione Covalently Bound to the pH Domain of Bruton'S Tyrosine Kinase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of 5-Bromoindoline-2,3-Dione Covalently Bound to the pH Domain of Bruton'S Tyrosine Kinase within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn202

b:62.1
occ:1.00
 ND1 D:HIS143 2.3 51.7 1.0
CB D:CYS165 2.4 69.4 1.0
SG D:CYS154 2.5 74.2 1.0
SG D:CYS155 2.5 72.4 1.0
SG D:CYS165 2.5 74.0 1.0
CE1 D:HIS143 3.1 50.8 1.0
CB D:CYS155 3.2 68.8 1.0
CA D:CYS165 3.3 68.6 1.0
CG D:HIS143 3.4 50.4 1.0
N D:CYS155 3.6 70.0 1.0
N D:CYS165 3.7 67.5 1.0
CB D:HIS143 3.8 46.9 1.0
CB D:CYS154 3.9 70.4 1.0
CA D:CYS155 4.0 69.0 1.0
CA D:HIS143 4.0 47.2 1.0
CB D:TYR152 4.1 66.9 1.0
C D:CYS154 4.2 74.5 1.0
NE2 D:HIS143 4.3 51.4 1.0
CG D:TYR152 4.4 65.5 1.0
CD2 D:HIS143 4.4 52.3 1.0
CA D:CYS154 4.5 70.0 1.0
CD D:PRO144 4.6 52.1 1.0
C D:CYS165 4.7 70.8 1.0
CD1 D:TYR152 4.7 66.8 1.0
C D:GLY164 4.8 67.7 1.0
O D:TYR142 4.9 51.9 1.0
O D:CYS154 4.9 75.3 1.0
NE2 D:GLN157 4.9 67.8 1.0
CD2 D:TYR152 5.0 65.1 1.0
N D:CYS154 5.0 70.1 1.0

Reference:

P.Brear, G.Fischer, M.May, T.Pantelejevs, R.Mathieu, M.Rossmann, J.Wagstaff, B.Blaszczyk, M.Hyvonen. Crystal Structure of 1-Methylindoline-2,3-Dione Covalently Bound to the pH Domain of Bruton'S Tyrosine Kinase Mutant R28C To Be Published.
Page generated: Tue Oct 29 08:15:33 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy