Zinc in PDB 6tnt: Sumoylated Apoapc/C with Repositioned APC2 Whb Domain

The binding sites of Zinc atom in the Sumoylated Apoapc/C with Repositioned APC2 Whb Domain (pdb code 6tnt). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Sumoylated Apoapc/C with Repositioned APC2 Whb Domain, PDB code: 6tnt:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Sumoylated Apoapc/C with Repositioned APC2 Whb Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Sumoylated Apoapc/C with Repositioned APC2 Whb Domain within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn101 b:397.9 occ:1.00 CD1 B:PHE55 2.5 384.1 1.0 CD1 B:ILE25 2.7 368.9 1.0 SG B:CYS23 2.9 366.9 1.0 CB B:PHE55 2.9 384.1 1.0 CB B:CYS59 3.1 376.2 1.0 CG B:PHE55 3.1 384.1 1.0 CG1 B:ILE25 3.2 368.9 1.0 N B:HIS56 3.4 378.4 1.0 CA B:PHE55 3.5 384.1 1.0 CE1 B:PHE55 3.6 384.1 1.0 N B:ILE60 3.8 375.6 1.0 C B:PHE55 3.8 384.1 1.0 CB B:ILE25 3.9 368.9 1.0 ND1 B:HIS56 4.0 378.4 1.0 C B:CYS59 4.0 376.2 1.0 CA B:CYS59 4.1 376.2 1.0 O B:HIS56 4.2 378.4 1.0 SG B:CYS59 4.3 376.2 1.0 CA B:ILE60 4.4 375.6 1.0 CA B:HIS56 4.4 378.4 1.0 CD2 B:PHE55 4.5 384.1 1.0 CB B:ILE60 4.5 375.6 1.0 N B:ILE25 4.5 368.9 1.0 CB B:HIS56 4.6 378.4 1.0 O B:CYS59 4.6 376.2 1.0 CB B:CYS23 4.7 366.9 1.0 CG B:HIS56 4.8 378.4 1.0 C B:HIS56 4.8 378.4 1.0 CZ B:PHE55 4.8 384.1 1.0 CA B:ILE25 4.8 368.9 1.0 N B:PHE55 4.9 384.1 1.0 O B:PHE55 4.9 384.1 1.0 CG2 B:ILE25 4.9 368.9 1.0

Zinc binding site 2 out of 3 in the Sumoylated Apoapc/C with Repositioned APC2 Whb Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Sumoylated Apoapc/C with Repositioned APC2 Whb Domain within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn102 b:445.9 occ:1.00 SG B:CYS51 2.4 404.5 1.0 CB B:CYS73 2.5 398.7 1.0 SG B:CYS76 2.5 397.4 1.0 SG B:CYS73 2.8 398.7 1.0 CB B:GLN78 3.5 396.6 1.0 CB B:CYS51 3.6 404.5 1.0 OE1 B:GLN78 3.8 396.6 1.0 O B:GLN78 3.9 396.6 1.0 CA B:CYS73 4.0 398.7 1.0 CD2 B:HIS53 4.0 397.5 1.0 N B:GLN78 4.1 396.6 1.0 CA B:GLN78 4.1 396.6 1.0 C B:GLN78 4.1 396.6 1.0 CB B:CYS76 4.3 397.4 1.0 CG B:GLN78 4.3 396.6 1.0 CD B:GLN78 4.3 396.6 1.0 N B:CYS73 4.5 398.7 1.0 CE3 B:TRP80 4.5 389.5 1.0 CG B:HIS53 4.6 397.5 1.0 N B:CYS76 4.7 397.4 1.0 CB B:HIS53 4.8 397.5 1.0 O B:GLU79 4.8 395.4 1.0 CA B:CYS76 4.8 397.4 1.0 C B:CYS76 4.9 397.4 1.0 C B:CYS73 4.9 398.7 1.0 NE2 B:HIS53 4.9 397.5 1.0 CA B:TRP80 4.9 389.5 1.0 C B:GLU79 5.0 395.4 1.0

Zinc binding site 3 out of 3 in the Sumoylated Apoapc/C with Repositioned APC2 Whb Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Sumoylated Apoapc/C with Repositioned APC2 Whb Domain within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn103 b:402.3 occ:1.00 NE2 B:HIS58 2.3 377.5 1.0 CE1 B:HIS58 2.3 377.5 1.0 ND1 B:HIS58 2.9 377.5 1.0 CD2 B:HIS58 2.9 377.5 1.0 CG B:HIS58 3.2 377.5 1.0 CB B:HIS58 4.4 377.5 1.0 SG B:CYS37 4.8 373.0 1.0

S.Yatskevich, D.Barford. Sumoylated Apoapc/C with Repositioned APC2 Whb Domain To Be Published.