Atomistry » Zinc » PDB 6tm9-6ty2 » 6tmf
Atomistry »
  Zinc »
    PDB 6tm9-6ty2 »
      6tmf »

Zinc in PDB 6tmf: Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex

Other elements in 6tmf:

The structure of Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex also contains other interesting chemical elements:

Magnesium (Mg) 29 atoms
Iron (Fe) 8 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex (pdb code 6tmf). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex, PDB code: 6tmf:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 6tmf

Go back to Zinc Binding Sites List in 6tmf
Zinc binding site 1 out of 4 in the Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Zn101

b:36.6
occ:1.00
 SG Q:CYS39 2.5 14.6 1.0
SG Q:CYS24 2.5 16.7 1.0
SG Q:CYS21 2.5 15.6 1.0
SG Q:CYS42 2.5 14.6 1.0
CB Q:CYS42 3.0 14.6 1.0
CB Q:CYS39 3.3 14.6 1.0
N Q:CYS24 3.5 16.7 1.0
CB Q:CYS24 3.5 16.7 1.0
CB Q:CYS21 3.6 15.6 1.0
N Q:CYS39 3.8 14.6 1.0
CB Q:ARG23 3.8 16.0 1.0
CA Q:CYS24 4.1 16.7 1.0
CA Q:CYS39 4.1 14.6 1.0
CA Q:CYS42 4.2 14.6 1.0
N Q:CYS42 4.3 14.6 1.0
O Q:CYS39 4.5 14.6 1.0
C Q:ARG23 4.5 16.0 1.0
CA Q:ARG23 4.6 16.0 1.0
C Q:CYS39 4.7 14.6 1.0
N Q:GLY25 4.8 16.1 1.0
N Q:ARG23 4.8 16.0 1.0
CG Q:ARG23 4.9 16.0 1.0
C Q:CYS24 5.0 16.7 1.0
C Q:LEU38 5.0 15.2 1.0
CD2 Q:LEU38 5.0 15.2 1.0

Zinc binding site 2 out of 4 in 6tmf

Go back to Zinc Binding Sites List in 6tmf
Zinc binding site 2 out of 4 in the Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
W:Zn101

b:40.9
occ:1.00
 CB W:CYS31 2.0 26.3 1.0
SG W:CYS54 2.2 24.4 1.0
SG W:CYS51 2.3 20.6 1.0
SG W:CYS28 2.3 21.1 1.0
SG W:CYS31 2.4 26.3 1.0
CB W:CYS28 2.8 21.1 1.0
CB W:CYS51 3.4 20.6 1.0
CA W:CYS31 3.5 26.3 1.0
O W:GLY32 3.6 24.1 1.0
CB W:CYS54 3.7 24.4 1.0
N W:CYS54 3.9 24.4 1.0
CB W:ALA34 4.1 20.7 1.0
N W:CYS31 4.1 26.3 1.0
C W:CYS31 4.1 26.3 1.0
CA W:CYS28 4.3 21.1 1.0
CA W:CYS54 4.4 24.4 1.0
N W:GLY32 4.4 24.1 1.0
CB W:LYS53 4.4 25.0 1.0
C W:GLY32 4.7 24.1 1.0
CA W:CYS51 4.8 20.6 1.0
C W:CYS28 4.9 21.1 1.0
O W:CYS31 4.9 26.3 1.0
O W:PRO29 4.9 20.6 1.0
C W:LYS53 5.0 25.0 1.0

Zinc binding site 3 out of 4 in 6tmf

Go back to Zinc Binding Sites List in 6tmf
Zinc binding site 3 out of 4 in the Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
W:Zn102

b:41.8
occ:1.00
 SG W:CYS13 2.2 18.8 1.0
SG W:CYS10 2.2 15.9 1.0
SG W:CYS42 2.3 13.6 1.0
SG W:CYS39 2.6 14.2 1.0
CB W:CYS13 2.8 18.8 1.0
CB W:CYS10 3.0 15.9 1.0
N W:CYS13 3.1 18.8 1.0
CB W:CYS42 3.4 13.6 1.0
CA W:CYS13 3.5 18.8 1.0
CB W:CYS39 3.8 14.2 1.0
CB W:SER12 3.8 16.4 1.0
C W:SER12 4.1 16.4 1.0
N W:CYS39 4.1 14.2 1.0
CA W:SER12 4.4 16.4 1.0
N W:SER12 4.4 16.4 1.0
CA W:CYS10 4.5 15.9 1.0
C W:CYS13 4.5 18.8 1.0
CA W:CYS39 4.5 14.2 1.0
N W:GLY14 4.6 17.4 1.0
CA W:CYS42 4.7 13.6 1.0
OG W:SER12 4.7 16.4 1.0
N W:CYS42 4.8 13.6 1.0
C W:CYS10 5.0 15.9 1.0

Zinc binding site 4 out of 4 in 6tmf

Go back to Zinc Binding Sites List in 6tmf
Zinc binding site 4 out of 4 in the Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
Y:Zn101

b:40.9
occ:1.00
 SG Y:CYS42 2.2 26.4 1.0
CB Y:CYS20 2.2 28.5 1.0
SG Y:CYS20 2.2 28.5 1.0
SG Y:CYS39 2.3 25.4 1.0
CB Y:CYS39 3.1 25.4 1.0
OD1 Y:ASN25 3.2 27.2 1.0
CA Y:CYS20 3.7 28.5 1.0
CB Y:CYS42 3.9 26.4 1.0
CB Y:CYS23 3.9 30.7 1.0
N Y:CYS23 4.1 30.7 1.0
CG2 Y:VAL41 4.1 26.4 1.0
CG Y:ASN25 4.3 27.2 1.0
N Y:CYS20 4.3 28.5 1.0
CB Y:ALA44 4.4 24.5 1.0
CA Y:CYS39 4.5 25.4 1.0
CA Y:CYS23 4.5 30.7 1.0
C Y:CYS20 4.6 28.5 1.0
N Y:CYS42 4.6 26.4 1.0
SG Y:CYS23 4.6 30.7 1.0
CD2 Y:LEU46 4.6 22.9 1.0
ND2 Y:ASN25 4.6 27.2 1.0
N Y:GLY24 4.7 27.9 1.0
CA Y:CYS42 4.8 26.4 1.0
CB Y:ASP22 4.8 30.4 1.0
N Y:ASP22 4.9 30.4 1.0

Reference:

E.Nuerenberg Goloub, H.Kratzat, H.Heinemann, A.Heuer, P.Koetter, O.Berninghausen, T.Becker, R.Tampe, R.Beckmann. Molecular Analysis of the Ribosome Recycling Factor ABCE1 Bound to the 30S Post-Splitting Complex Embo J. 2020.
ISSN: ESSN 1460-2075
DOI: 10.15252/EMBJ.2019103788
Page generated: Tue Oct 29 08:05:08 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy