Atomistry » Zinc » PDB 6tlx-6twm » 6tmf
Atomistry »
  Zinc »
    PDB 6tlx-6twm »
      6tmf »

Zinc in PDB 6tmf: Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex

Other elements in 6tmf:

The structure of Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex also contains other interesting chemical elements:

Magnesium (Mg) 29 atoms
Iron (Fe) 8 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex (pdb code 6tmf). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex, PDB code: 6tmf:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 6tmf

Go back to Zinc Binding Sites List in 6tmf
Zinc binding site 1 out of 4 in the Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Zn101

b:36.6
occ:1.00
SG Q:CYS39 2.5 14.6 1.0
SG Q:CYS24 2.5 16.7 1.0
SG Q:CYS21 2.5 15.6 1.0
SG Q:CYS42 2.5 14.6 1.0
CB Q:CYS42 3.0 14.6 1.0
CB Q:CYS39 3.3 14.6 1.0
N Q:CYS24 3.5 16.7 1.0
CB Q:CYS24 3.5 16.7 1.0
CB Q:CYS21 3.6 15.6 1.0
N Q:CYS39 3.8 14.6 1.0
CB Q:ARG23 3.8 16.0 1.0
CA Q:CYS24 4.1 16.7 1.0
CA Q:CYS39 4.1 14.6 1.0
CA Q:CYS42 4.2 14.6 1.0
N Q:CYS42 4.3 14.6 1.0
O Q:CYS39 4.5 14.6 1.0
C Q:ARG23 4.5 16.0 1.0
CA Q:ARG23 4.6 16.0 1.0
C Q:CYS39 4.7 14.6 1.0
N Q:GLY25 4.8 16.1 1.0
N Q:ARG23 4.8 16.0 1.0
CG Q:ARG23 4.9 16.0 1.0
C Q:CYS24 5.0 16.7 1.0
C Q:LEU38 5.0 15.2 1.0
CD2 Q:LEU38 5.0 15.2 1.0

Zinc binding site 2 out of 4 in 6tmf

Go back to Zinc Binding Sites List in 6tmf
Zinc binding site 2 out of 4 in the Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
W:Zn101

b:40.9
occ:1.00
CB W:CYS31 2.0 26.3 1.0
SG W:CYS54 2.2 24.4 1.0
SG W:CYS51 2.3 20.6 1.0
SG W:CYS28 2.3 21.1 1.0
SG W:CYS31 2.4 26.3 1.0
CB W:CYS28 2.8 21.1 1.0
CB W:CYS51 3.4 20.6 1.0
CA W:CYS31 3.5 26.3 1.0
O W:GLY32 3.6 24.1 1.0
CB W:CYS54 3.7 24.4 1.0
N W:CYS54 3.9 24.4 1.0
CB W:ALA34 4.1 20.7 1.0
N W:CYS31 4.1 26.3 1.0
C W:CYS31 4.1 26.3 1.0
CA W:CYS28 4.3 21.1 1.0
CA W:CYS54 4.4 24.4 1.0
N W:GLY32 4.4 24.1 1.0
CB W:LYS53 4.4 25.0 1.0
C W:GLY32 4.7 24.1 1.0
CA W:CYS51 4.8 20.6 1.0
C W:CYS28 4.9 21.1 1.0
O W:CYS31 4.9 26.3 1.0
O W:PRO29 4.9 20.6 1.0
C W:LYS53 5.0 25.0 1.0

Zinc binding site 3 out of 4 in 6tmf

Go back to Zinc Binding Sites List in 6tmf
Zinc binding site 3 out of 4 in the Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
W:Zn102

b:41.8
occ:1.00
SG W:CYS13 2.2 18.8 1.0
SG W:CYS10 2.2 15.9 1.0
SG W:CYS42 2.3 13.6 1.0
SG W:CYS39 2.6 14.2 1.0
CB W:CYS13 2.8 18.8 1.0
CB W:CYS10 3.0 15.9 1.0
N W:CYS13 3.1 18.8 1.0
CB W:CYS42 3.4 13.6 1.0
CA W:CYS13 3.5 18.8 1.0
CB W:CYS39 3.8 14.2 1.0
CB W:SER12 3.8 16.4 1.0
C W:SER12 4.1 16.4 1.0
N W:CYS39 4.1 14.2 1.0
CA W:SER12 4.4 16.4 1.0
N W:SER12 4.4 16.4 1.0
CA W:CYS10 4.5 15.9 1.0
C W:CYS13 4.5 18.8 1.0
CA W:CYS39 4.5 14.2 1.0
N W:GLY14 4.6 17.4 1.0
CA W:CYS42 4.7 13.6 1.0
OG W:SER12 4.7 16.4 1.0
N W:CYS42 4.8 13.6 1.0
C W:CYS10 5.0 15.9 1.0

Zinc binding site 4 out of 4 in 6tmf

Go back to Zinc Binding Sites List in 6tmf
Zinc binding site 4 out of 4 in the Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structure of An Archaeal ABCE1-Bound Ribosomal Post-Splitting Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
Y:Zn101

b:40.9
occ:1.00
SG Y:CYS42 2.2 26.4 1.0
CB Y:CYS20 2.2 28.5 1.0
SG Y:CYS20 2.2 28.5 1.0
SG Y:CYS39 2.3 25.4 1.0
CB Y:CYS39 3.1 25.4 1.0
OD1 Y:ASN25 3.2 27.2 1.0
CA Y:CYS20 3.7 28.5 1.0
CB Y:CYS42 3.9 26.4 1.0
CB Y:CYS23 3.9 30.7 1.0
N Y:CYS23 4.1 30.7 1.0
CG2 Y:VAL41 4.1 26.4 1.0
CG Y:ASN25 4.3 27.2 1.0
N Y:CYS20 4.3 28.5 1.0
CB Y:ALA44 4.4 24.5 1.0
CA Y:CYS39 4.5 25.4 1.0
CA Y:CYS23 4.5 30.7 1.0
C Y:CYS20 4.6 28.5 1.0
N Y:CYS42 4.6 26.4 1.0
SG Y:CYS23 4.6 30.7 1.0
CD2 Y:LEU46 4.6 22.9 1.0
ND2 Y:ASN25 4.6 27.2 1.0
N Y:GLY24 4.7 27.9 1.0
CA Y:CYS42 4.8 26.4 1.0
CB Y:ASP22 4.8 30.4 1.0
N Y:ASP22 4.9 30.4 1.0

Reference:

E.Nuerenberg Goloub, H.Kratzat, H.Heinemann, A.Heuer, P.Koetter, O.Berninghausen, T.Becker, R.Tampe, R.Beckmann. Molecular Analysis of the Ribosome Recycling Factor ABCE1 Bound to the 30S Post-Splitting Complex Embo J. 2020.
ISSN: ESSN 1460-2075
DOI: 10.15252/EMBJ.2019103788
Page generated: Tue Oct 29 08:05:08 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy