Zinc in PDB 6tay: Mouse RNF213 Mutant R4753K Modeling the Moyamoya-Disease-Related Human Variant R4810K

Enzymatic activity of Mouse RNF213 Mutant R4753K Modeling the Moyamoya-Disease-Related Human Variant R4810K

All present enzymatic activity of Mouse RNF213 Mutant R4753K Modeling the Moyamoya-Disease-Related Human Variant R4810K:
2.3.2.27;

Other elements in 6tay:

The structure of Mouse RNF213 Mutant R4753K Modeling the Moyamoya-Disease-Related Human Variant R4810K also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Mouse RNF213 Mutant R4753K Modeling the Moyamoya-Disease-Related Human Variant R4810K (pdb code 6tay). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Mouse RNF213 Mutant R4753K Modeling the Moyamoya-Disease-Related Human Variant R4810K, PDB code: 6tay:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6tay

Go back to Zinc Binding Sites List in 6tay
Zinc binding site 1 out of 2 in the Mouse RNF213 Mutant R4753K Modeling the Moyamoya-Disease-Related Human Variant R4810K


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Mouse RNF213 Mutant R4753K Modeling the Moyamoya-Disease-Related Human Variant R4810K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn5203

b:0.4
occ:1.00
ND1 A:HIS3964 2.2 0.8 1.0
SG A:CYS3982 2.4 0.7 1.0
SG A:CYS3962 2.4 0.1 1.0
SG A:CYS3985 2.4 0.0 1.0
CE1 A:HIS3964 2.9 0.8 1.0
CG A:HIS3964 3.1 0.8 1.0
CB A:CYS3982 3.4 0.7 1.0
CB A:CYS3962 3.6 0.1 1.0
CB A:HIS3964 3.6 0.8 1.0
CB A:CYS3985 3.7 0.0 1.0
NE2 A:HIS3964 3.9 0.8 1.0
N A:CYS3985 4.0 0.0 1.0
CD2 A:HIS3964 4.1 0.8 1.0
O A:CYS3962 4.3 0.1 1.0
CA A:CYS3985 4.4 0.0 1.0
OH A:TYR3966 4.5 0.6 1.0
CD2 A:LEU3960 4.5 0.9 1.0
C A:CYS3962 4.7 0.1 1.0
CA A:CYS3962 4.8 0.1 1.0
CB A:TYR3984 4.8 0.5 1.0
CA A:CYS3982 4.9 0.7 1.0
CA A:HIS3964 5.0 0.8 1.0
C A:CYS3985 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 6tay

Go back to Zinc Binding Sites List in 6tay
Zinc binding site 2 out of 2 in the Mouse RNF213 Mutant R4753K Modeling the Moyamoya-Disease-Related Human Variant R4810K


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Mouse RNF213 Mutant R4753K Modeling the Moyamoya-Disease-Related Human Variant R4810K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn5204

b:0.6
occ:1.00
SG A:CYS3967 2.5 0.7 1.0
SG A:CYS3950 2.5 0.8 1.0
SG A:CYS3947 2.5 96.2 0.5
SG A:CYS3970 2.5 0.8 1.0
CB A:CYS3950 3.0 0.8 1.0
CB A:CYS3967 3.1 0.7 1.0
CB A:CYS3947 3.1 96.2 0.5
N A:CYS3950 3.4 0.8 1.0
CB A:CYS3970 3.5 0.8 1.0
CA A:CYS3950 3.8 0.8 1.0
N A:CYS3967 3.9 0.7 1.0
CA A:CYS3967 4.1 0.7 1.0
CB A:ILE3949 4.5 0.0 1.0
CA A:CYS3947 4.6 96.2 0.5
C A:ILE3949 4.6 0.0 1.0
C A:CYS3950 4.8 0.8 1.0
CA A:CYS3970 4.8 0.8 1.0
N A:ILE3949 4.8 0.0 1.0
NH2 A:ARG3969 4.8 0.2 1.0
CA A:ILE3949 4.9 0.0 1.0
C A:CYS3947 5.0 96.2 0.5

Reference:

J.Ahel, A.Lehner, A.Vogel, A.Schleiffer, A.Meinhart, D.Haselbach, T.Clausen. Cryo-Em Structure of RNF213 Reveals A Ring-Type E3 with A Dynein Core and Cysteine Reactivity To Be Published.
Page generated: Wed Dec 16 12:52:23 2020

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