Zinc in PDB 6tax: Mouse RNF213 Wild Type Protein

All present enzymatic activity of Mouse RNF213 Wild Type Protein:
2.3.2.27;

The structure of Mouse RNF213 Wild Type Protein also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Zinc atom in the Mouse RNF213 Wild Type Protein (pdb code 6tax). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Mouse RNF213 Wild Type Protein, PDB code: 6tax:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Mouse RNF213 Wild Type Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Mouse RNF213 Wild Type Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn5203 b:0.2 occ:1.00 ND1 A:HIS3964 2.2 0.8 1.0 CE1 A:HIS3964 2.4 0.8 1.0 SG A:CYS3962 2.4 0.0 1.0 SG A:CYS3982 2.5 0.2 1.0 SG A:CYS3985 2.5 0.1 1.0 CD2 A:LEU3960 3.1 0.6 1.0 CB A:CYS3982 3.2 0.2 1.0 CG A:HIS3964 3.4 0.8 1.0 NE2 A:HIS3964 3.6 0.8 1.0 CB A:CYS3985 3.8 0.1 1.0 N A:CYS3985 4.0 0.1 1.0 CB A:CYS3962 4.1 0.0 1.0 CD2 A:HIS3964 4.1 0.8 1.0 CB A:HIS3964 4.3 0.8 1.0 CG A:LEU3960 4.4 0.6 1.0 CA A:CYS3985 4.4 0.1 1.0 CB A:LEU3960 4.5 0.6 1.0 CB A:THR3987 4.6 0.0 1.0 CA A:CYS3982 4.7 0.2 1.0 OG1 A:THR3987 4.7 0.0 1.0 CB A:TYR3984 4.8 0.3 1.0 C A:CYS3985 4.9 0.1 1.0 OH A:TYR3966 4.9 0.1 1.0 N A:THR3987 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the Mouse RNF213 Wild Type Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Mouse RNF213 Wild Type Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn5204 b:0.1 occ:1.00 SG A:CYS3950 2.5 0.9 1.0 SG A:CYS3967 2.5 0.1 1.0 SG A:CYS3970 2.6 0.6 1.0 SG A:CYS3947 2.8 0.4 0.5 CB A:CYS3950 2.9 0.9 1.0 CB A:CYS3947 3.0 0.4 0.5 CB A:CYS3967 3.2 0.1 1.0 N A:CYS3950 3.4 0.9 1.0 CB A:CYS3970 3.5 0.6 1.0 CA A:CYS3950 3.8 0.9 1.0 N A:CYS3967 4.0 0.1 1.0 CA A:CYS3967 4.2 0.1 1.0 CB A:ILE3949 4.4 0.3 1.0 CA A:CYS3947 4.4 0.4 0.5 C A:ILE3949 4.6 0.3 1.0 C A:CYS3950 4.8 0.9 1.0 C A:CYS3947 4.8 0.4 0.5 CA A:ILE3949 4.9 0.3 1.0 O A:CYS3947 4.9 0.4 0.5 CA A:CYS3970 4.9 0.6 1.0 N A:ILE3949 4.9 0.3 1.0 CG2 A:ILE3949 4.9 0.3 1.0 O A:GLY3952 4.9 0.9 1.0 NH2 A:ARG3969 5.0 0.9 1.0

J.Ahel, A.Lehner, A.Vogel, A.Schleiffer, A.Meinhart, D.Haselbach, T.Clausen. Cryo-Em Structure of RNF213 Reveals A Ring-Type E3 with A Dynein Core and Cysteine Reactivity To Be Published.