Zinc in PDB 6omf: Cryoem Structure of Sigmas-Transcription Initiation Complex with Activator Crl

Enzymatic activity of Cryoem Structure of Sigmas-Transcription Initiation Complex with Activator Crl

All present enzymatic activity of Cryoem Structure of Sigmas-Transcription Initiation Complex with Activator Crl:
2.7.7.6;

Other elements in 6omf:

The structure of Cryoem Structure of Sigmas-Transcription Initiation Complex with Activator Crl also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryoem Structure of Sigmas-Transcription Initiation Complex with Activator Crl (pdb code 6omf). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryoem Structure of Sigmas-Transcription Initiation Complex with Activator Crl, PDB code: 6omf:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6omf

Go back to Zinc Binding Sites List in 6omf
Zinc binding site 1 out of 2 in the Cryoem Structure of Sigmas-Transcription Initiation Complex with Activator Crl


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryoem Structure of Sigmas-Transcription Initiation Complex with Activator Crl within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn1502

b:0.5
occ:1.00
SG D:CYS70 2.4 0.6 1.0
SG D:CYS72 2.4 0.8 1.0
SG D:CYS85 2.5 0.4 1.0
SG D:CYS88 2.5 0.9 1.0
CB D:CYS88 2.6 0.9 1.0
N D:CYS88 3.1 0.9 1.0
CB D:CYS72 3.2 0.8 1.0
N D:CYS72 3.3 0.8 1.0
CB D:CYS85 3.4 0.4 1.0
CA D:CYS88 3.5 0.9 1.0
C D:LYS87 3.8 0.0 1.0
CA D:CYS72 3.9 0.8 1.0
CB D:CYS70 3.9 0.6 1.0
CB D:LYS87 3.9 0.0 1.0
N D:LEU71 4.2 0.7 1.0
CA D:LYS87 4.2 0.0 1.0
N D:LYS87 4.2 0.0 1.0
C D:LEU71 4.5 0.7 1.0
C D:CYS88 4.5 0.9 1.0
O D:LYS87 4.6 0.0 1.0
CA D:LEU71 4.7 0.7 1.0
N D:GLY89 4.7 0.0 1.0
CB D:LEU71 4.8 0.7 1.0
C D:CYS72 4.8 0.8 1.0
N D:GLY73 4.8 0.2 1.0
CA D:CYS85 4.9 0.4 1.0

Zinc binding site 2 out of 2 in 6omf

Go back to Zinc Binding Sites List in 6omf
Zinc binding site 2 out of 2 in the Cryoem Structure of Sigmas-Transcription Initiation Complex with Activator Crl


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryoem Structure of Sigmas-Transcription Initiation Complex with Activator Crl within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn1503

b:0.1
occ:1.00
SG D:CYS888 2.4 0.8 1.0
SG D:CYS898 2.4 0.6 1.0
SG D:CYS895 2.5 0.7 1.0
SG D:CYS814 2.5 0.4 1.0
CB D:CYS814 2.5 0.4 1.0
CB D:CYS895 2.9 0.7 1.0
CB D:CYS898 3.1 0.6 1.0
NH2 D:ARG883 3.1 0.9 1.0
CB D:CYS888 3.4 0.8 1.0
N D:CYS814 3.4 0.4 1.0
CA D:CYS814 3.5 0.4 1.0
CA D:CYS888 3.8 0.8 1.0
CA D:CYS895 4.0 0.7 1.0
N D:CYS895 4.0 0.7 1.0
N D:ASP889 4.0 0.2 1.0
N D:CYS898 4.2 0.6 1.0
CA D:CYS898 4.2 0.6 1.0
CZ D:ARG883 4.3 0.9 1.0
OG1 D:THR890 4.4 0.3 1.0
C D:CYS888 4.4 0.8 1.0
OG1 D:THR816 4.4 0.1 1.0
C D:CYS814 4.5 0.4 1.0
C D:CYS895 4.6 0.7 1.0
O D:CYS895 4.6 0.7 1.0
C D:ASP813 4.7 0.7 1.0
N D:GLY815 4.8 0.4 1.0
NE D:ARG883 4.8 0.9 1.0

Reference:

A.J.Cartagena, A.B.Banta, N.Sathyan, W.Ross, R.L.Gourse, E.A.Campbell, S.A.Darst. Structural Basis For Transcription Activation By Crl Through Tethering of Sigmasand Rna Polymerase. Proc.Natl.Acad.Sci.Usa V. 116 18923 2019.
ISSN: ESSN 1091-6490
PubMed: 31484766
DOI: 10.1073/PNAS.1910827116
Page generated: Wed Dec 16 12:27:05 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy