Zinc in PDB 6gyr: Transcription Factor Dimerization Activates the P300 Acetyltransferase
Enzymatic activity of Transcription Factor Dimerization Activates the P300 Acetyltransferase
All present enzymatic activity of Transcription Factor Dimerization Activates the P300 Acetyltransferase:
2.3.1.48;
Protein crystallography data
The structure of Transcription Factor Dimerization Activates the P300 Acetyltransferase, PDB code: 6gyr
was solved by
D.Panne,
E.Ortega,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
50.00 /
3.10
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
100.826,
146.717,
116.477,
90.00,
91.75,
90.00
|
R / Rfree (%)
|
20.9 /
26.5
|
Zinc Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
14;
Binding sites:
The binding sites of Zinc atom in the Transcription Factor Dimerization Activates the P300 Acetyltransferase
(pdb code 6gyr). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 14 binding sites of Zinc where determined in the
Transcription Factor Dimerization Activates the P300 Acetyltransferase, PDB code: 6gyr:
Jump to Zinc binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Zinc binding site 1 out
of 14 in 6gyr
Go back to
Zinc Binding Sites List in 6gyr
Zinc binding site 1 out
of 14 in the Transcription Factor Dimerization Activates the P300 Acetyltransferase
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Transcription Factor Dimerization Activates the P300 Acetyltransferase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn1701
b:78.3
occ:1.00
|
ND1
|
A:HIS1255
|
2.2
|
50.0
|
1.0
|
SG
|
A:CYS1164
|
2.3
|
49.8
|
1.0
|
SG
|
A:CYS1163
|
2.3
|
49.5
|
1.0
|
SG
|
A:CYS1258
|
2.5
|
50.3
|
1.0
|
HB2
|
A:HIS1255
|
2.7
|
61.7
|
1.0
|
CG
|
A:HIS1255
|
3.1
|
51.8
|
1.0
|
CE1
|
A:HIS1255
|
3.2
|
48.1
|
1.0
|
H
|
A:CYS1164
|
3.2
|
56.7
|
1.0
|
HB2
|
A:CYS1258
|
3.3
|
49.8
|
1.0
|
CB
|
A:HIS1255
|
3.3
|
51.4
|
1.0
|
HE1
|
A:HIS1255
|
3.4
|
57.7
|
1.0
|
H
|
A:HIS1255
|
3.5
|
63.8
|
1.0
|
CB
|
A:CYS1164
|
3.5
|
73.1
|
1.0
|
HB2
|
A:CYS1163
|
3.5
|
68.4
|
1.0
|
CB
|
A:CYS1258
|
3.5
|
41.5
|
1.0
|
HB3
|
A:CYS1164
|
3.5
|
87.8
|
1.0
|
N
|
A:CYS1164
|
3.5
|
47.2
|
1.0
|
CB
|
A:CYS1163
|
3.6
|
57.0
|
1.0
|
HB3
|
A:CYS1258
|
3.7
|
49.8
|
1.0
|
HB3
|
A:HIS1255
|
3.9
|
61.7
|
1.0
|
CA
|
A:CYS1164
|
4.0
|
56.6
|
1.0
|
HH2
|
A:TRP1115
|
4.2
|
60.5
|
1.0
|
C
|
A:CYS1163
|
4.2
|
55.2
|
1.0
|
HZ2
|
A:TRP1115
|
4.2
|
67.6
|
1.0
|
N
|
A:HIS1255
|
4.2
|
53.1
|
1.0
|
CD2
|
A:HIS1255
|
4.2
|
64.2
|
1.0
|
HB3
|
A:CYS1163
|
4.3
|
68.4
|
1.0
|
HD12
|
A:LEU1168
|
4.3
|
90.8
|
1.0
|
NE2
|
A:HIS1255
|
4.3
|
62.8
|
1.0
|
HB2
|
A:CYS1164
|
4.3
|
87.8
|
1.0
|
HH21
|
A:ARG1645
|
4.3
|
56.9
|
1.0
|
C
|
A:CYS1164
|
4.3
|
50.3
|
1.0
|
O
|
A:CYS1164
|
4.4
|
57.5
|
1.0
|
HD11
|
A:LEU1168
|
4.4
|
90.8
|
1.0
|
CA
|
A:HIS1255
|
4.4
|
46.5
|
1.0
|
CA
|
A:CYS1163
|
4.5
|
59.0
|
1.0
|
H
|
A:ARG1166
|
4.5
|
55.5
|
1.0
|
H
|
A:CYS1258
|
4.8
|
59.5
|
1.0
|
CD1
|
A:LEU1168
|
4.8
|
75.6
|
1.0
|
H
|
A:CYS1163
|
4.8
|
61.9
|
1.0
|
CZ2
|
A:TRP1115
|
4.8
|
56.3
|
1.0
|
HB2
|
A:ARG1166
|
4.9
|
83.7
|
1.0
|
CH2
|
A:TRP1115
|
4.9
|
50.4
|
1.0
|
HA
|
A:CYS1164
|
4.9
|
68.0
|
1.0
|
NH2
|
A:ARG1645
|
4.9
|
47.3
|
1.0
|
CA
|
A:CYS1258
|
4.9
|
44.1
|
1.0
|
O
|
A:CYS1163
|
5.0
|
65.0
|
1.0
|
|
Zinc binding site 2 out
of 14 in 6gyr
Go back to
Zinc Binding Sites List in 6gyr
Zinc binding site 2 out
of 14 in the Transcription Factor Dimerization Activates the P300 Acetyltransferase
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Transcription Factor Dimerization Activates the P300 Acetyltransferase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn1702
b:78.0
occ:1.00
|
SG
|
A:CYS1272
|
2.4
|
64.4
|
1.0
|
SG
|
A:CYS1247
|
2.4
|
65.4
|
1.0
|
SG
|
A:CYS1250
|
2.4
|
64.4
|
1.0
|
SG
|
A:CYS1275
|
2.6
|
67.7
|
1.0
|
H
|
A:CYS1250
|
3.1
|
69.5
|
1.0
|
H
|
A:CYS1272
|
3.1
|
63.7
|
1.0
|
HB2
|
A:CYS1247
|
3.1
|
74.9
|
1.0
|
CB
|
A:CYS1247
|
3.2
|
62.3
|
1.0
|
HB3
|
A:CYS1247
|
3.2
|
74.9
|
1.0
|
HB3
|
A:CYS1272
|
3.2
|
79.9
|
1.0
|
HB3
|
A:CYS1250
|
3.2
|
72.8
|
1.0
|
HB2
|
A:CYS1275
|
3.3
|
64.6
|
1.0
|
CB
|
A:CYS1272
|
3.4
|
66.5
|
1.0
|
CB
|
A:CYS1250
|
3.4
|
60.6
|
1.0
|
CB
|
A:CYS1275
|
3.6
|
53.8
|
1.0
|
H
|
A:CYS1275
|
3.6
|
73.2
|
1.0
|
N
|
A:CYS1250
|
3.8
|
57.8
|
1.0
|
N
|
A:CYS1272
|
3.9
|
53.0
|
1.0
|
HB2
|
A:GLU1249
|
4.0
|
89.6
|
1.0
|
HH11
|
A:ARG1252
|
4.1
|
88.9
|
1.0
|
HD2
|
A:ARG1252
|
4.1
|
69.2
|
1.0
|
HB2
|
A:CYS1272
|
4.2
|
79.9
|
1.0
|
CA
|
A:CYS1272
|
4.2
|
60.4
|
1.0
|
HB2
|
A:ARG1252
|
4.2
|
71.7
|
1.0
|
HB2
|
A:CYS1250
|
4.2
|
72.8
|
1.0
|
CA
|
A:CYS1250
|
4.2
|
59.4
|
1.0
|
HB3
|
A:CYS1275
|
4.3
|
64.6
|
1.0
|
N
|
A:CYS1275
|
4.3
|
61.0
|
1.0
|
HE3
|
A:MET1254
|
4.4
|
0.2
|
1.0
|
H
|
A:ARG1252
|
4.5
|
63.4
|
1.0
|
HE1
|
A:MET1254
|
4.5
|
0.2
|
1.0
|
H
|
A:GLU1249
|
4.5
|
62.8
|
1.0
|
CA
|
A:CYS1275
|
4.6
|
58.0
|
1.0
|
CA
|
A:CYS1247
|
4.6
|
55.7
|
1.0
|
H
|
A:GLY1251
|
4.7
|
69.2
|
1.0
|
HA
|
A:VAL1271
|
4.7
|
76.8
|
1.0
|
HG13
|
A:VAL1271
|
4.8
|
75.4
|
1.0
|
O
|
A:CYS1272
|
4.8
|
62.2
|
1.0
|
C
|
A:CYS1272
|
4.8
|
60.8
|
1.0
|
NH1
|
A:ARG1252
|
4.9
|
74.1
|
1.0
|
CB
|
A:GLU1249
|
4.9
|
74.6
|
1.0
|
HA
|
A:CYS1247
|
4.9
|
66.9
|
1.0
|
C
|
A:CYS1250
|
4.9
|
53.4
|
1.0
|
HA
|
A:CYS1275
|
4.9
|
69.6
|
1.0
|
CE
|
A:MET1254
|
4.9
|
88.4
|
1.0
|
C
|
A:GLU1249
|
5.0
|
64.9
|
1.0
|
HA
|
A:CYS1250
|
5.0
|
71.3
|
1.0
|
|
Zinc binding site 3 out
of 14 in 6gyr
Go back to
Zinc Binding Sites List in 6gyr
Zinc binding site 3 out
of 14 in the Transcription Factor Dimerization Activates the P300 Acetyltransferase
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Transcription Factor Dimerization Activates the P300 Acetyltransferase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn1703
b:0.4
occ:1.00
|
HG
|
A:CYS1177
|
1.7
|
0.1
|
1.0
|
SG
|
A:CYS1201
|
2.0
|
0.7
|
1.0
|
SG
|
A:CYS1183
|
2.2
|
0.7
|
1.0
|
HB3
|
A:CYS1204
|
2.8
|
0.8
|
1.0
|
HG
|
A:CYS1201
|
2.8
|
0.7
|
1.0
|
SG
|
A:CYS1177
|
2.9
|
0.6
|
1.0
|
HB3
|
A:CYS1183
|
3.1
|
0.4
|
1.0
|
HB2
|
A:LYS1180
|
3.1
|
0.6
|
1.0
|
CB
|
A:CYS1183
|
3.1
|
0.4
|
1.0
|
HG
|
A:CYS1204
|
3.2
|
0.5
|
1.0
|
SG
|
A:CYS1204
|
3.2
|
0.6
|
1.0
|
HB2
|
A:CYS1183
|
3.2
|
0.4
|
1.0
|
HB3
|
A:CYS1201
|
3.3
|
0.6
|
1.0
|
CB
|
A:CYS1201
|
3.4
|
0.6
|
1.0
|
CB
|
A:CYS1204
|
3.4
|
0.9
|
1.0
|
HB3
|
A:CYS1177
|
3.4
|
0.6
|
1.0
|
H
|
A:CYS1201
|
3.5
|
0.9
|
1.0
|
HB2
|
A:CYS1177
|
3.5
|
0.6
|
1.0
|
CB
|
A:CYS1177
|
3.6
|
0.7
|
1.0
|
HB2
|
A:CYS1204
|
3.9
|
0.8
|
1.0
|
H
|
A:CYS1204
|
3.9
|
0.7
|
1.0
|
H
|
A:LYS1180
|
3.9
|
0.0
|
1.0
|
HB2
|
A:CYS1201
|
4.0
|
0.6
|
1.0
|
CB
|
A:LYS1180
|
4.0
|
0.1
|
1.0
|
HG2
|
A:LYS1180
|
4.1
|
0.5
|
1.0
|
HD3
|
A:LYS1180
|
4.2
|
0.7
|
1.0
|
N
|
A:CYS1201
|
4.2
|
0.5
|
1.0
|
CA
|
A:CYS1201
|
4.4
|
0.4
|
1.0
|
HB3
|
A:LYS1180
|
4.4
|
0.6
|
1.0
|
CG
|
A:LYS1180
|
4.5
|
0.8
|
1.0
|
CA
|
A:CYS1183
|
4.6
|
0.0
|
1.0
|
N
|
A:CYS1204
|
4.6
|
0.0
|
1.0
|
CA
|
A:CYS1204
|
4.6
|
0.1
|
1.0
|
N
|
A:LYS1180
|
4.6
|
0.6
|
1.0
|
CD
|
A:LYS1180
|
4.8
|
0.5
|
1.0
|
H
|
A:THR1184
|
4.8
|
0.6
|
1.0
|
HA
|
A:CYS1183
|
4.9
|
0.7
|
1.0
|
HB3
|
A:LYS1203
|
5.0
|
0.1
|
1.0
|
CA
|
A:LYS1180
|
5.0
|
1.0
|
1.0
|
|
Zinc binding site 4 out
of 14 in 6gyr
Go back to
Zinc Binding Sites List in 6gyr
Zinc binding site 4 out
of 14 in the Transcription Factor Dimerization Activates the P300 Acetyltransferase
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Transcription Factor Dimerization Activates the P300 Acetyltransferase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn1705
b:78.6
occ:1.00
|
HE2
|
A:HIS1315
|
1.6
|
62.9
|
1.0
|
NE2
|
A:HIS1315
|
2.2
|
52.4
|
1.0
|
SG
|
A:CYS1408
|
2.3
|
66.8
|
1.0
|
HD2
|
A:HIS1315
|
2.5
|
45.4
|
1.0
|
CD2
|
A:HIS1315
|
2.6
|
37.8
|
1.0
|
CB
|
A:CYS1408
|
3.5
|
61.9
|
1.0
|
CE1
|
A:HIS1315
|
3.5
|
66.9
|
1.0
|
HB2
|
A:CYS1408
|
3.5
|
74.3
|
1.0
|
HB3
|
A:CYS1408
|
3.5
|
74.3
|
1.0
|
CG
|
A:HIS1315
|
4.0
|
42.0
|
1.0
|
HE1
|
A:HIS1315
|
4.0
|
80.3
|
1.0
|
ND1
|
A:HIS1315
|
4.3
|
51.1
|
1.0
|
HB2
|
A:PRO1406
|
4.5
|
56.2
|
1.0
|
HG
|
A:LEU1409
|
4.7
|
48.3
|
1.0
|
H
|
A:CYS1408
|
4.7
|
49.3
|
1.0
|
CA
|
A:CYS1408
|
4.9
|
46.5
|
1.0
|
|
Zinc binding site 5 out
of 14 in 6gyr
Go back to
Zinc Binding Sites List in 6gyr
Zinc binding site 5 out
of 14 in the Transcription Factor Dimerization Activates the P300 Acetyltransferase
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 5 of Transcription Factor Dimerization Activates the P300 Acetyltransferase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn1701
b:84.0
occ:1.00
|
ND1
|
B:HIS1255
|
2.2
|
48.0
|
1.0
|
SG
|
B:CYS1164
|
2.2
|
65.7
|
1.0
|
HB2
|
B:HIS1255
|
2.4
|
66.7
|
1.0
|
SG
|
B:CYS1163
|
2.4
|
61.4
|
1.0
|
SG
|
B:CYS1258
|
2.6
|
51.2
|
1.0
|
CG
|
B:HIS1255
|
2.9
|
57.2
|
1.0
|
CB
|
B:HIS1255
|
3.1
|
55.5
|
1.0
|
CE1
|
B:HIS1255
|
3.3
|
59.1
|
1.0
|
H
|
B:HIS1255
|
3.3
|
66.7
|
1.0
|
HB2
|
B:CYS1258
|
3.4
|
71.6
|
1.0
|
H
|
B:CYS1164
|
3.5
|
87.3
|
1.0
|
HE1
|
B:HIS1255
|
3.6
|
71.0
|
1.0
|
CB
|
B:CYS1258
|
3.6
|
59.6
|
1.0
|
HB2
|
B:CYS1163
|
3.6
|
89.0
|
1.0
|
HB3
|
B:HIS1255
|
3.6
|
66.7
|
1.0
|
CB
|
B:CYS1164
|
3.7
|
81.0
|
1.0
|
CB
|
B:CYS1163
|
3.7
|
74.1
|
1.0
|
N
|
B:CYS1164
|
3.7
|
72.7
|
1.0
|
HB3
|
B:CYS1258
|
3.8
|
71.6
|
1.0
|
HB3
|
B:CYS1164
|
3.9
|
97.3
|
1.0
|
N
|
B:HIS1255
|
4.0
|
55.5
|
1.0
|
HH2
|
B:TRP1115
|
4.1
|
74.4
|
1.0
|
CD2
|
B:HIS1255
|
4.1
|
64.2
|
1.0
|
CA
|
B:HIS1255
|
4.2
|
60.3
|
1.0
|
CA
|
B:CYS1164
|
4.2
|
71.0
|
1.0
|
HZ2
|
B:TRP1115
|
4.2
|
89.6
|
1.0
|
NE2
|
B:HIS1255
|
4.2
|
65.3
|
1.0
|
HD12
|
B:LEU1168
|
4.3
|
73.8
|
1.0
|
C
|
B:CYS1163
|
4.3
|
55.9
|
1.0
|
HB3
|
B:CYS1163
|
4.4
|
89.0
|
1.0
|
HB2
|
B:CYS1164
|
4.4
|
97.3
|
1.0
|
O
|
B:CYS1164
|
4.4
|
61.1
|
1.0
|
C
|
B:CYS1164
|
4.5
|
58.7
|
1.0
|
H
|
B:ARG1166
|
4.5
|
76.7
|
1.0
|
HH21
|
B:ARG1645
|
4.6
|
59.8
|
1.0
|
HD11
|
B:LEU1168
|
4.6
|
73.8
|
1.0
|
CA
|
B:CYS1163
|
4.6
|
48.0
|
1.0
|
H
|
B:CYS1163
|
4.7
|
64.2
|
1.0
|
HA
|
B:HIS1255
|
4.7
|
72.4
|
1.0
|
CH2
|
B:TRP1115
|
4.8
|
62.0
|
1.0
|
CZ2
|
B:TRP1115
|
4.8
|
74.6
|
1.0
|
HB2
|
B:ARG1166
|
4.8
|
68.0
|
1.0
|
H
|
B:CYS1258
|
4.9
|
65.4
|
1.0
|
CD1
|
B:LEU1168
|
4.9
|
61.4
|
1.0
|
HD2
|
B:HIS1255
|
4.9
|
77.1
|
1.0
|
CA
|
B:CYS1258
|
5.0
|
54.9
|
1.0
|
|
Zinc binding site 6 out
of 14 in 6gyr
Go back to
Zinc Binding Sites List in 6gyr
Zinc binding site 6 out
of 14 in the Transcription Factor Dimerization Activates the P300 Acetyltransferase
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 6 of Transcription Factor Dimerization Activates the P300 Acetyltransferase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn1702
b:84.0
occ:1.00
|
SG
|
B:CYS1272
|
2.4
|
75.1
|
1.0
|
SG
|
B:CYS1275
|
2.4
|
68.8
|
1.0
|
SG
|
B:CYS1250
|
2.4
|
76.7
|
1.0
|
SG
|
B:CYS1247
|
2.5
|
61.8
|
1.0
|
HB3
|
B:CYS1250
|
2.6
|
84.6
|
1.0
|
H
|
B:CYS1250
|
2.8
|
90.2
|
1.0
|
CB
|
B:CYS1250
|
3.0
|
70.5
|
1.0
|
H
|
B:CYS1272
|
3.0
|
72.2
|
1.0
|
HB3
|
B:CYS1247
|
3.2
|
67.6
|
1.0
|
CB
|
B:CYS1247
|
3.3
|
56.2
|
1.0
|
HB2
|
B:CYS1247
|
3.3
|
67.6
|
1.0
|
HB3
|
B:CYS1272
|
3.3
|
96.7
|
1.0
|
CB
|
B:CYS1272
|
3.4
|
80.6
|
1.0
|
HB2
|
B:CYS1275
|
3.4
|
82.0
|
1.0
|
N
|
B:CYS1250
|
3.5
|
75.1
|
1.0
|
H
|
B:CYS1275
|
3.6
|
73.2
|
1.0
|
CB
|
B:CYS1275
|
3.6
|
68.3
|
1.0
|
HB2
|
B:CYS1250
|
3.8
|
84.6
|
1.0
|
N
|
B:CYS1272
|
3.8
|
60.1
|
1.0
|
CA
|
B:CYS1250
|
3.9
|
69.8
|
1.0
|
HB2
|
B:GLU1249
|
3.9
|
70.9
|
1.0
|
CA
|
B:CYS1272
|
4.1
|
74.1
|
1.0
|
HB2
|
B:CYS1272
|
4.2
|
96.7
|
1.0
|
HD2
|
B:ARG1252
|
4.3
|
82.1
|
1.0
|
N
|
B:CYS1275
|
4.3
|
61.0
|
1.0
|
HB3
|
B:CYS1275
|
4.3
|
82.0
|
1.0
|
HH11
|
B:ARG1252
|
4.3
|
87.4
|
1.0
|
H
|
B:GLY1251
|
4.4
|
83.4
|
1.0
|
H
|
B:GLU1249
|
4.5
|
92.0
|
1.0
|
CA
|
B:CYS1275
|
4.5
|
64.4
|
1.0
|
HA
|
B:CYS1250
|
4.6
|
83.9
|
1.0
|
HG13
|
B:VAL1271
|
4.6
|
83.1
|
1.0
|
HA
|
B:VAL1271
|
4.6
|
75.2
|
1.0
|
HE1
|
B:MET1254
|
4.6
|
87.4
|
1.0
|
O
|
B:CYS1272
|
4.7
|
65.6
|
1.0
|
H
|
B:ARG1252
|
4.7
|
61.7
|
1.0
|
C
|
B:CYS1272
|
4.7
|
66.3
|
1.0
|
HB2
|
B:ARG1252
|
4.7
|
66.0
|
1.0
|
CA
|
B:CYS1247
|
4.7
|
64.6
|
1.0
|
C
|
B:GLU1249
|
4.7
|
78.7
|
1.0
|
C
|
B:CYS1250
|
4.8
|
67.8
|
1.0
|
CB
|
B:GLU1249
|
4.8
|
59.0
|
1.0
|
N
|
B:GLY1251
|
4.8
|
69.5
|
1.0
|
HE3
|
B:MET1254
|
4.8
|
87.4
|
1.0
|
HA
|
B:CYS1275
|
4.9
|
77.3
|
1.0
|
C
|
B:VAL1271
|
5.0
|
53.4
|
1.0
|
|
Zinc binding site 7 out
of 14 in 6gyr
Go back to
Zinc Binding Sites List in 6gyr
Zinc binding site 7 out
of 14 in the Transcription Factor Dimerization Activates the P300 Acetyltransferase
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 7 of Transcription Factor Dimerization Activates the P300 Acetyltransferase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn1703
b:0.3
occ:1.00
|
HB3
|
B:CYS1183
|
2.1
|
0.7
|
1.0
|
HG
|
B:CYS1204
|
2.4
|
0.1
|
1.0
|
CB
|
B:CYS1183
|
2.4
|
0.1
|
1.0
|
HB2
|
B:CYS1183
|
2.4
|
0.7
|
1.0
|
SG
|
B:CYS1183
|
2.4
|
0.7
|
1.0
|
SG
|
B:CYS1201
|
2.5
|
0.4
|
1.0
|
HA3
|
B:GLY1179
|
2.5
|
0.5
|
1.0
|
HB2
|
B:CYS1204
|
2.7
|
0.0
|
1.0
|
HG
|
B:CYS1177
|
2.8
|
0.0
|
1.0
|
SG
|
B:CYS1204
|
3.0
|
0.6
|
1.0
|
HB3
|
B:CYS1201
|
3.1
|
0.8
|
1.0
|
H
|
B:GLY1179
|
3.2
|
0.3
|
1.0
|
CB
|
B:CYS1201
|
3.3
|
1.0
|
1.0
|
CB
|
B:CYS1204
|
3.3
|
0.3
|
1.0
|
CA
|
B:GLY1179
|
3.4
|
0.2
|
1.0
|
HB3
|
B:CYS1177
|
3.5
|
0.3
|
1.0
|
HB2
|
B:CYS1201
|
3.5
|
0.8
|
1.0
|
SG
|
B:CYS1177
|
3.6
|
0.5
|
1.0
|
HB3
|
B:CYS1204
|
3.7
|
0.0
|
1.0
|
N
|
B:GLY1179
|
3.7
|
0.8
|
1.0
|
H
|
B:LYS1180
|
3.8
|
0.2
|
1.0
|
CA
|
B:CYS1183
|
3.9
|
0.1
|
1.0
|
HA2
|
B:GLY1179
|
4.0
|
0.5
|
1.0
|
CB
|
B:CYS1177
|
4.0
|
0.4
|
1.0
|
C
|
B:GLY1179
|
4.1
|
0.7
|
1.0
|
H
|
B:CYS1204
|
4.2
|
0.3
|
1.0
|
N
|
B:LYS1180
|
4.2
|
0.1
|
1.0
|
HA
|
B:CYS1183
|
4.4
|
0.6
|
1.0
|
HD11
|
B:ILE1185
|
4.4
|
0.3
|
1.0
|
H
|
B:CYS1201
|
4.4
|
0.3
|
1.0
|
H
|
B:CYS1183
|
4.4
|
0.9
|
1.0
|
HB2
|
B:CYS1177
|
4.4
|
0.3
|
1.0
|
HG3
|
B:LYS1180
|
4.6
|
1.0
|
1.0
|
C
|
B:CYS1183
|
4.6
|
0.1
|
1.0
|
CA
|
B:CYS1204
|
4.6
|
0.4
|
1.0
|
N
|
B:CYS1183
|
4.7
|
0.1
|
1.0
|
HE1
|
B:PHE1200
|
4.7
|
0.9
|
1.0
|
CA
|
B:CYS1201
|
4.7
|
0.2
|
1.0
|
HD13
|
B:ILE1185
|
4.8
|
0.3
|
1.0
|
N
|
B:CYS1204
|
4.8
|
0.4
|
1.0
|
O
|
B:CYS1183
|
4.8
|
0.7
|
1.0
|
N
|
B:CYS1201
|
5.0
|
0.7
|
1.0
|
O
|
B:GLY1179
|
5.0
|
0.2
|
1.0
|
|
Zinc binding site 8 out
of 14 in 6gyr
Go back to
Zinc Binding Sites List in 6gyr
Zinc binding site 8 out
of 14 in the Transcription Factor Dimerization Activates the P300 Acetyltransferase
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 8 of Transcription Factor Dimerization Activates the P300 Acetyltransferase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn1705
b:92.3
occ:1.00
|
NE2
|
B:HIS1315
|
2.1
|
56.5
|
1.0
|
SG
|
B:CYS1408
|
2.2
|
64.3
|
1.0
|
NE2
|
D:HIS1315
|
2.3
|
45.5
|
1.0
|
SG
|
D:CYS1408
|
2.5
|
63.9
|
1.0
|
HD2
|
B:HIS1315
|
2.8
|
67.9
|
1.0
|
CD2
|
B:HIS1315
|
2.8
|
56.5
|
1.0
|
HD2
|
D:HIS1315
|
2.9
|
59.2
|
1.0
|
CD2
|
D:HIS1315
|
3.0
|
49.2
|
1.0
|
CE1
|
B:HIS1315
|
3.3
|
86.7
|
1.0
|
CE1
|
D:HIS1315
|
3.4
|
69.8
|
1.0
|
HE1
|
B:HIS1315
|
3.6
|
0.1
|
1.0
|
CB
|
B:CYS1408
|
3.8
|
57.9
|
1.0
|
HE1
|
D:HIS1315
|
3.8
|
83.9
|
1.0
|
HB3
|
B:CYS1408
|
3.9
|
69.5
|
1.0
|
CB
|
D:CYS1408
|
3.9
|
60.2
|
1.0
|
HB3
|
D:CYS1408
|
4.0
|
72.3
|
1.0
|
HB2
|
B:CYS1408
|
4.0
|
69.5
|
1.0
|
CG
|
B:HIS1315
|
4.1
|
61.4
|
1.0
|
HB2
|
B:PRO1406
|
4.2
|
70.6
|
1.0
|
CG
|
D:HIS1315
|
4.2
|
45.4
|
1.0
|
HB2
|
D:CYS1408
|
4.2
|
72.3
|
1.0
|
ND1
|
B:HIS1315
|
4.3
|
71.9
|
1.0
|
ND1
|
D:HIS1315
|
4.4
|
62.4
|
1.0
|
H
|
B:CYS1408
|
4.6
|
44.6
|
1.0
|
HG
|
B:LEU1409
|
4.8
|
40.7
|
1.0
|
HG
|
D:LEU1409
|
4.8
|
42.3
|
1.0
|
HB2
|
D:PRO1406
|
4.9
|
69.1
|
1.0
|
CB
|
B:PRO1406
|
4.9
|
58.8
|
1.0
|
HG3
|
B:PRO1406
|
4.9
|
63.4
|
1.0
|
HB3
|
B:PRO1406
|
4.9
|
70.6
|
1.0
|
|
Zinc binding site 9 out
of 14 in 6gyr
Go back to
Zinc Binding Sites List in 6gyr
Zinc binding site 9 out
of 14 in the Transcription Factor Dimerization Activates the P300 Acetyltransferase
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 9 of Transcription Factor Dimerization Activates the P300 Acetyltransferase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Zn1701
b:88.9
occ:1.00
|
HD1
|
C:HIS1255
|
2.0
|
92.5
|
1.0
|
SG
|
C:CYS1164
|
2.1
|
93.1
|
1.0
|
SG
|
C:CYS1163
|
2.1
|
0.3
|
1.0
|
H
|
C:CYS1164
|
2.2
|
82.0
|
1.0
|
H
|
C:HIS1255
|
2.6
|
0.8
|
1.0
|
ND1
|
C:HIS1255
|
2.7
|
77.0
|
1.0
|
N
|
C:CYS1164
|
2.9
|
68.3
|
1.0
|
HG
|
C:CYS1258
|
2.9
|
92.8
|
1.0
|
HB2
|
C:HIS1255
|
3.0
|
0.1
|
1.0
|
HB2
|
C:CYS1258
|
3.1
|
95.9
|
1.0
|
CB
|
C:CYS1164
|
3.3
|
0.0
|
1.0
|
HB3
|
C:CYS1258
|
3.5
|
95.9
|
1.0
|
N
|
C:HIS1255
|
3.5
|
86.5
|
1.0
|
CG
|
C:HIS1255
|
3.5
|
93.1
|
1.0
|
HB3
|
C:CYS1164
|
3.5
|
0.1
|
1.0
|
CB
|
C:CYS1258
|
3.6
|
79.9
|
1.0
|
CA
|
C:CYS1164
|
3.6
|
79.5
|
1.0
|
CB
|
C:HIS1255
|
3.6
|
98.4
|
1.0
|
CB
|
C:CYS1163
|
3.6
|
0.7
|
1.0
|
CE1
|
C:HIS1255
|
3.7
|
87.7
|
1.0
|
SG
|
C:CYS1258
|
3.7
|
77.3
|
1.0
|
H
|
C:CYS1163
|
3.8
|
0.6
|
1.0
|
HB3
|
C:MET1254
|
3.8
|
0.1
|
1.0
|
HB2
|
C:CYS1163
|
3.8
|
0.9
|
1.0
|
HA
|
C:MET1254
|
3.9
|
0.5
|
1.0
|
C
|
C:CYS1163
|
3.9
|
90.0
|
1.0
|
HE1
|
C:HIS1255
|
3.9
|
0.3
|
1.0
|
HZ2
|
C:TRP1115
|
4.0
|
0.5
|
1.0
|
O
|
C:CYS1164
|
4.0
|
0.0
|
1.0
|
C
|
C:CYS1164
|
4.0
|
0.0
|
1.0
|
CA
|
C:CYS1163
|
4.1
|
0.7
|
1.0
|
HB2
|
C:CYS1164
|
4.1
|
0.1
|
1.0
|
CA
|
C:HIS1255
|
4.1
|
95.4
|
1.0
|
N
|
C:CYS1163
|
4.2
|
0.4
|
1.0
|
HB3
|
C:CYS1163
|
4.3
|
0.9
|
1.0
|
HB3
|
C:HIS1255
|
4.4
|
0.1
|
1.0
|
C
|
C:MET1254
|
4.5
|
98.3
|
1.0
|
CA
|
C:MET1254
|
4.5
|
0.1
|
1.0
|
HA
|
C:CYS1164
|
4.5
|
95.5
|
1.0
|
CB
|
C:MET1254
|
4.6
|
88.4
|
1.0
|
CD2
|
C:HIS1255
|
4.6
|
85.7
|
1.0
|
HH2
|
C:TRP1115
|
4.7
|
0.2
|
1.0
|
NE2
|
C:HIS1255
|
4.7
|
80.0
|
1.0
|
HG2
|
C:MET1254
|
4.7
|
0.1
|
1.0
|
CZ2
|
C:TRP1115
|
4.8
|
92.9
|
1.0
|
HA
|
C:HIS1255
|
4.8
|
0.6
|
1.0
|
HD1
|
C:TYR1162
|
4.9
|
0.1
|
1.0
|
N
|
C:GLY1165
|
4.9
|
0.5
|
1.0
|
O
|
C:HIS1255
|
4.9
|
90.5
|
1.0
|
O
|
C:CYS1163
|
5.0
|
0.8
|
1.0
|
|
Zinc binding site 10 out
of 14 in 6gyr
Go back to
Zinc Binding Sites List in 6gyr
Zinc binding site 10 out
of 14 in the Transcription Factor Dimerization Activates the P300 Acetyltransferase
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 10 of Transcription Factor Dimerization Activates the P300 Acetyltransferase within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Zn1702
b:0.1
occ:1.00
|
SG
|
C:CYS1275
|
2.4
|
0.8
|
1.0
|
SG
|
C:CYS1250
|
2.4
|
0.9
|
1.0
|
SG
|
C:CYS1272
|
2.5
|
0.5
|
1.0
|
SG
|
C:CYS1247
|
2.7
|
0.0
|
1.0
|
HB2
|
C:CYS1250
|
3.0
|
0.2
|
1.0
|
HB2
|
C:CYS1275
|
3.2
|
0.7
|
1.0
|
HB3
|
C:CYS1247
|
3.3
|
0.2
|
1.0
|
CB
|
C:CYS1250
|
3.3
|
0.1
|
1.0
|
H
|
C:CYS1272
|
3.3
|
0.3
|
1.0
|
CB
|
C:CYS1275
|
3.5
|
0.7
|
1.0
|
CB
|
C:CYS1247
|
3.5
|
0.8
|
1.0
|
HB2
|
C:CYS1247
|
3.7
|
0.2
|
1.0
|
H
|
C:CYS1275
|
3.7
|
0.6
|
1.0
|
H
|
C:GLU1249
|
3.9
|
0.3
|
1.0
|
CB
|
C:CYS1272
|
4.0
|
0.6
|
1.0
|
HB3
|
C:CYS1250
|
4.0
|
0.2
|
1.0
|
N
|
C:CYS1250
|
4.0
|
0.5
|
1.0
|
H
|
C:CYS1250
|
4.0
|
0.3
|
1.0
|
N
|
C:CYS1272
|
4.1
|
0.9
|
1.0
|
HB3
|
C:CYS1275
|
4.1
|
0.7
|
1.0
|
HB2
|
C:GLU1249
|
4.1
|
0.1
|
1.0
|
HB3
|
C:CYS1272
|
4.2
|
0.4
|
1.0
|
CA
|
C:CYS1250
|
4.3
|
0.9
|
1.0
|
C
|
C:GLU1249
|
4.3
|
0.3
|
1.0
|
N
|
C:CYS1275
|
4.4
|
1.0
|
1.0
|
CA
|
C:CYS1275
|
4.5
|
0.7
|
1.0
|
CA
|
C:CYS1272
|
4.5
|
0.8
|
1.0
|
HG13
|
C:VAL1271
|
4.5
|
0.8
|
1.0
|
HH11
|
C:ARG1252
|
4.5
|
0.2
|
1.0
|
N
|
C:GLU1249
|
4.6
|
0.2
|
1.0
|
O
|
C:CYS1272
|
4.6
|
0.7
|
1.0
|
HB2
|
C:CYS1272
|
4.7
|
0.4
|
1.0
|
HA
|
C:CYS1250
|
4.7
|
1.0
|
1.0
|
HA
|
C:VAL1271
|
4.7
|
0.5
|
1.0
|
HE3
|
C:MET1254
|
4.7
|
0.9
|
1.0
|
O
|
C:GLU1249
|
4.8
|
0.8
|
1.0
|
CA
|
C:GLU1249
|
4.8
|
0.9
|
1.0
|
HA
|
C:CYS1275
|
4.8
|
0.5
|
1.0
|
CB
|
C:GLU1249
|
4.9
|
0.2
|
1.0
|
C
|
C:CYS1272
|
4.9
|
0.7
|
1.0
|
HE1
|
C:MET1254
|
4.9
|
0.9
|
1.0
|
CA
|
C:CYS1247
|
4.9
|
0.8
|
1.0
|
HG12
|
C:VAL1271
|
4.9
|
0.8
|
1.0
|
H
|
C:THR1248
|
5.0
|
0.3
|
1.0
|
HB2
|
C:ARG1252
|
5.0
|
0.0
|
1.0
|
|
Reference:
E.Ortega,
S.Rengachari,
Z.Ibrahim,
N.Hoghoughi,
J.Gaucher,
A.S.Holehouse,
S.Khochbin,
D.Panne.
Transcription Factor Dimerization Activates the P300 Acetyltransferase. Nature V. 562 538 2018.
ISSN: ESSN 1476-4687
PubMed: 30323286
DOI: 10.1038/S41586-018-0621-1
Page generated: Mon Oct 28 22:05:45 2024
|