Zinc in PDB 6gov: Structure of the Rna Polymerase Lambda-Based Antitermination Complex

All present enzymatic activity of Structure of the Rna Polymerase Lambda-Based Antitermination Complex:
2.7.7.6;

The structure of Structure of the Rna Polymerase Lambda-Based Antitermination Complex also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Zinc atom in the Structure of the Rna Polymerase Lambda-Based Antitermination Complex (pdb code 6gov). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of the Rna Polymerase Lambda-Based Antitermination Complex, PDB code: 6gov:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structure of the Rna Polymerase Lambda-Based Antitermination Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Rna Polymerase Lambda-Based Antitermination Complex within 5.0Å range: probe atom residue distance (Å) B Occ Y:Zn1502 b:0.8 occ:1.00 N Y:CYS88 2.0 0.9 1.0 SG Y:CYS72 2.2 0.2 1.0 SG Y:CYS85 2.3 0.7 1.0 CB Y:LYS87 2.3 0.6 1.0 C Y:LYS87 2.3 0.6 1.0 SG Y:CYS88 2.4 0.9 1.0 CA Y:LYS87 2.5 0.6 1.0 SG Y:CYS70 2.6 0.2 1.0 CB Y:CYS72 2.7 0.2 1.0 N Y:LYS87 2.7 0.6 1.0 CB Y:CYS88 2.9 0.9 1.0 CA Y:CYS88 3.0 0.9 1.0 CB Y:CYS85 3.3 0.7 1.0 O Y:LYS87 3.3 0.6 1.0 CG Y:LYS87 3.6 0.6 1.0 C Y:GLU86 3.8 0.2 1.0 CA Y:CYS72 3.9 0.2 1.0 C Y:CYS88 4.0 0.9 1.0 N Y:CYS72 4.0 0.2 1.0 N Y:GLY89 4.1 0.5 1.0 N Y:GLU86 4.2 0.2 1.0 CD Y:LYS87 4.3 0.6 1.0 CB Y:CYS70 4.3 0.2 1.0 C Y:CYS85 4.5 0.7 1.0 CA Y:CYS85 4.5 0.7 1.0 O Y:GLU86 4.6 0.2 1.0 CA Y:GLU86 4.6 0.2 1.0 C Y:CYS72 4.9 0.2 1.0

Zinc binding site 2 out of 2 in the Structure of the Rna Polymerase Lambda-Based Antitermination Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of the Rna Polymerase Lambda-Based Antitermination Complex within 5.0Å range: probe atom residue distance (Å) B Occ Y:Zn1503 b:0.4 occ:1.00 SG Y:CYS888 2.1 0.9 1.0 SG Y:CYS814 2.1 0.3 1.0 SG Y:CYS898 2.2 98.9 1.0 CA Y:CYS888 2.3 0.9 1.0 CB Y:CYS888 2.5 0.9 1.0 SG Y:CYS895 2.5 99.0 1.0 N Y:ASP889 2.6 0.1 1.0 C Y:CYS888 2.9 0.9 1.0 CB Y:CYS814 3.1 0.3 1.0 CB Y:CYS898 3.6 98.9 1.0 N Y:CYS888 3.6 0.9 1.0 CA Y:ASP889 3.9 0.1 1.0 O Y:SER887 4.0 0.8 1.0 O Y:CYS888 4.1 0.9 1.0 CB Y:CYS895 4.1 99.0 1.0 NH2 Y:ARG883 4.1 0.9 1.0 CB Y:ASP889 4.2 0.1 1.0 C Y:SER887 4.2 0.8 1.0 N Y:THR890 4.4 0.0 1.0 OG1 Y:THR816 4.5 0.3 1.0 CA Y:CYS814 4.5 0.3 1.0 C Y:ASP889 4.7 0.1 1.0 N Y:CYS895 4.9 99.0 1.0 CA Y:CYS898 4.9 98.9 1.0 N Y:CYS814 4.9 0.3 1.0

F.Krupp, N.Said, Y.H.Huang, B.Loll, J.Burger, T.Mielke, C.M.T.Spahn, M.C.Wahl. Structural Basis For the Action of An All-Purpose Transcription Anti-Termination Factor. Mol.Cell V. 74 143 2019.
ISSN: ISSN 1097-2765
PubMed: 30795892
DOI: 10.1016/J.MOLCEL.2019.01.016