Zinc in PDB 5no2: Rsga-Gdpnp Bound to the 30S Ribosomal Subunit (Rsga Assembly Intermediate)

The structure of Rsga-Gdpnp Bound to the 30S Ribosomal Subunit (Rsga Assembly Intermediate) also contains other interesting chemical elements:

Magnesium

(Mg)

71 atoms

The binding sites of Zinc atom in the Rsga-Gdpnp Bound to the 30S Ribosomal Subunit (Rsga Assembly Intermediate) (pdb code 5no2). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Rsga-Gdpnp Bound to the 30S Ribosomal Subunit (Rsga Assembly Intermediate), PDB code: 5no2:

Zinc binding site 1 out of 1 in the Rsga-Gdpnp Bound to the 30S Ribosomal Subunit (Rsga Assembly Intermediate)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Rsga-Gdpnp Bound to the 30S Ribosomal Subunit (Rsga Assembly Intermediate) within 5.0Å range: probe atom residue distance (Å) B Occ Z:Zn401 b:0.2 occ:1.00 ND1 Z:HIS304 2.3 0.0 1.0 SG Z:CYS302 2.5 0.4 1.0 SG Z:CYS310 2.5 1.0 1.0 SG Z:CYS297 2.5 87.8 1.0 CE1 Z:HIS304 2.6 0.0 1.0 CB Z:CYS310 3.1 1.0 1.0 CB Z:CYS297 3.2 87.8 1.0 CA Z:CYS310 3.4 1.0 1.0 CB Z:CYS302 3.4 0.4 1.0 CG Z:HIS304 3.5 0.0 1.0 NE2 Z:HIS304 3.8 0.0 1.0 N Z:ALA311 4.2 0.7 1.0 CA Z:HIS304 4.2 0.0 1.0 C Z:CYS310 4.2 1.0 1.0 CD2 Z:HIS304 4.2 0.0 1.0 CB Z:HIS304 4.2 0.0 1.0 N Z:CYS310 4.6 1.0 1.0 CA Z:CYS297 4.6 87.8 1.0 N Z:HIS304 4.7 0.0 1.0 CA Z:CYS302 4.8 0.4 1.0 N Z:ILE312 4.8 95.4 1.0 O Z:GLY309 5.0 0.8 1.0

J.P.Lopez-Alonso, T.Kaminishi, T.Kikuchi, Y.Hirata, I.Iturrioz, N.Dhimole, A.Schedlbauer, Y.Hase, S.Goto, D.Kurita, A.Muto, S.Zhou, C.Naoe, D.J.Mills, D.Gil-Carton, C.Takemoto, H.Himeno, P.Fucini, S.R.Connell. Rsga Couples the Maturation State of the 30S Ribosomal Decoding Center to Activation of Its Gtpase Pocket. Nucleic Acids Res. V. 45 6945 2017.
ISSN: ESSN 1362-4962
PubMed: 28482099
DOI: 10.1093/NAR/GKX324