Atomistry » Zinc » PDB 6fhh-6fsm » 6flp
Atomistry »
  Zinc »
    PDB 6fhh-6fsm »
      6flp »

Zinc in PDB 6flp: Cryoem Structure of E.Coli Rna Polymerase Paused Elongation Complex Without Rna Hairpin Bound to Nusa

Enzymatic activity of Cryoem Structure of E.Coli Rna Polymerase Paused Elongation Complex Without Rna Hairpin Bound to Nusa

All present enzymatic activity of Cryoem Structure of E.Coli Rna Polymerase Paused Elongation Complex Without Rna Hairpin Bound to Nusa:
2.7.7.6;

Other elements in 6flp:

The structure of Cryoem Structure of E.Coli Rna Polymerase Paused Elongation Complex Without Rna Hairpin Bound to Nusa also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryoem Structure of E.Coli Rna Polymerase Paused Elongation Complex Without Rna Hairpin Bound to Nusa (pdb code 6flp). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryoem Structure of E.Coli Rna Polymerase Paused Elongation Complex Without Rna Hairpin Bound to Nusa, PDB code: 6flp:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6flp

Go back to Zinc Binding Sites List in 6flp
Zinc binding site 1 out of 2 in the Cryoem Structure of E.Coli Rna Polymerase Paused Elongation Complex Without Rna Hairpin Bound to Nusa


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryoem Structure of E.Coli Rna Polymerase Paused Elongation Complex Without Rna Hairpin Bound to Nusa within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn1502

b:0.5
occ:1.00
N D:CYS72 2.2 0.8 1.0
SG D:CYS72 2.5 0.8 1.0
CB D:CYS72 2.9 0.8 1.0
N D:LEU71 2.9 0.5 1.0
CA D:CYS72 3.1 0.8 1.0
CB D:CYS70 3.1 0.7 1.0
SG D:CYS70 3.2 0.7 1.0
C D:LEU71 3.2 0.5 1.0
CA D:LEU71 3.5 0.5 1.0
C D:CYS70 3.6 0.7 1.0
CB D:LEU71 3.8 0.5 1.0
N D:GLY73 3.9 0.5 1.0
CA D:CYS70 3.9 0.7 1.0
C D:CYS72 3.9 0.8 1.0
CB D:CYS85 3.9 0.7 1.0
SG D:CYS85 4.1 0.7 1.0
O D:LEU71 4.4 0.5 1.0
O D:CYS70 4.4 0.7 1.0
CB D:VAL90 4.4 0.8 1.0
O D:CYS88 4.8 0.0 1.0
CG2 D:VAL90 4.9 0.8 1.0
CG1 D:VAL90 4.9 0.8 1.0
O D:VAL90 5.0 0.8 1.0

Zinc binding site 2 out of 2 in 6flp

Go back to Zinc Binding Sites List in 6flp
Zinc binding site 2 out of 2 in the Cryoem Structure of E.Coli Rna Polymerase Paused Elongation Complex Without Rna Hairpin Bound to Nusa


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryoem Structure of E.Coli Rna Polymerase Paused Elongation Complex Without Rna Hairpin Bound to Nusa within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn1503

b:0.2
occ:1.00
SG D:CYS888 2.5 0.5 1.0
SG D:CYS895 2.5 0.1 1.0
SG D:CYS814 2.6 0.4 1.0
CB D:CYS898 2.6 0.6 1.0
NH2 D:ARG883 2.8 0.1 1.0
SG D:CYS898 3.2 0.6 1.0
CB D:CYS888 3.5 0.5 1.0
CB D:CYS814 3.6 0.4 1.0
CZ D:ARG883 3.9 0.1 1.0
CA D:CYS888 3.9 0.5 1.0
CA D:CYS898 4.0 0.6 1.0
CB D:CYS895 4.2 0.1 1.0
N D:ASP889 4.2 0.7 1.0
N D:CYS898 4.3 0.6 1.0
NE D:ARG883 4.5 0.1 1.0
N D:CYS814 4.5 0.4 1.0
C D:CYS888 4.7 0.5 1.0
O D:CYS895 4.7 0.1 1.0
CA D:CYS814 4.7 0.4 1.0
N D:CYS895 4.8 0.1 1.0
NH1 D:ARG883 4.9 0.1 1.0
OD1 D:ASP813 4.9 0.6 1.0
CA D:CYS895 5.0 0.1 1.0

Reference:

X.Guo, A.G.Myasnikov, J.Chen, C.Crucifix, G.Papai, M.Takacs, P.Schultz, A.Weixlbaumer. Structural Basis For Nusa Stabilized Transcriptional Pausing. Mol. Cell V. 69 816 2018.
ISSN: ISSN 1097-4164
PubMed: 29499136
DOI: 10.1016/J.MOLCEL.2018.02.008
Page generated: Mon Oct 28 21:11:56 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy