Zinc in PDB 6oeo: Cryo-Em Structure of Mouse RAG1/2 Nfc Complex (DNA1)

All present enzymatic activity of Cryo-Em Structure of Mouse RAG1/2 Nfc Complex (DNA1):
2.3.2.27;

The structure of Cryo-Em Structure of Mouse RAG1/2 Nfc Complex (DNA1) also contains other interesting chemical elements:

Calcium

(Ca)

4 atoms

The binding sites of Zinc atom in the Cryo-Em Structure of Mouse RAG1/2 Nfc Complex (DNA1) (pdb code 6oeo). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em Structure of Mouse RAG1/2 Nfc Complex (DNA1), PDB code: 6oeo:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Cryo-Em Structure of Mouse RAG1/2 Nfc Complex (DNA1)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Mouse RAG1/2 Nfc Complex (DNA1) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1103 b:0.8 occ:1.00 NE2 A:HIS937 2.0 83.3 1.0 NE2 A:HIS942 2.0 83.4 1.0 SG A:CYS730 2.3 85.7 1.0 SG A:CYS727 2.3 81.7 1.0 CE1 A:HIS942 2.7 83.4 1.0 CB A:CYS727 2.7 81.7 1.0 CE1 A:HIS937 2.8 83.3 1.0 CD2 A:HIS937 3.1 83.3 1.0 CD2 A:HIS942 3.1 83.4 1.0 ND1 A:HIS942 3.8 83.4 1.0 CB A:CYS730 3.9 85.7 1.0 ND1 A:HIS937 3.9 83.3 1.0 CG A:HIS942 4.0 83.4 1.0 CG A:HIS937 4.1 83.3 1.0 CA A:CYS727 4.2 81.7 1.0 N A:CYS730 4.2 85.7 1.0 ND1 A:HIS744 4.3 90.5 1.0 CA A:CYS730 4.6 85.7 1.0 OG1 A:THR732 4.8 90.0 1.0 CB A:ALA941 4.9 85.0 1.0 CB A:HIS744 4.9 90.5 1.0 O A:SER745 5.0 78.9 1.0

Zinc binding site 2 out of 2 in the Cryo-Em Structure of Mouse RAG1/2 Nfc Complex (DNA1)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Mouse RAG1/2 Nfc Complex (DNA1) within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn1103 b:87.6 occ:1.00 NE2 C:HIS937 2.0 63.2 1.0 NE2 C:HIS942 2.0 61.0 1.0 SG C:CYS730 2.3 64.0 1.0 SG C:CYS727 2.3 63.7 1.0 CD2 C:HIS937 2.3 63.2 1.0 CB C:CYS727 2.4 63.7 1.0 CD2 C:HIS942 2.9 61.0 1.0 CE1 C:HIS942 3.1 61.0 1.0 CE1 C:HIS937 3.2 63.2 1.0 CG C:HIS937 3.6 63.2 1.0 CB C:CYS730 3.9 64.0 1.0 CA C:CYS727 3.9 63.7 1.0 ND1 C:HIS937 3.9 63.2 1.0 CG C:HIS942 4.0 61.0 1.0 N C:CYS730 4.1 64.0 1.0 ND1 C:HIS942 4.1 61.0 1.0 CA C:CYS730 4.6 64.0 1.0 N C:CYS727 4.7 63.7 1.0 C C:CYS727 4.7 63.7 1.0 CB C:HIS937 4.8 63.2 1.0 O C:CYS727 5.0 63.7 1.0

X.Chen, Y.Cui, Z.H.Zhou, W.Yang, M.Gellert. Cutting Antiparallel Dna Strands in A Single Active Site Nat.Struct.Mol.Biol. 2020.
ISSN: ESSN 1545-9985