Zinc in PDB 5cm2: Insights Into Molecular Plasticity in Protein Complexes From TRM9- TRM112 Trna Modifying Enzyme Crystal Structure

The structure of Insights Into Molecular Plasticity in Protein Complexes From TRM9- TRM112 Trna Modifying Enzyme Crystal Structure, PDB code: 5cm2 was solved by J.Letoquart, N.Van Tran, V.Caroline, A.Aleksandrov, N.Lazar, H.Vantilbeurgh, D.Liger, M.Graille, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.05 / 2.50
Space group	I 4 3 2
Cell size a, b, c (Å), α, β, γ (°)	176.200, 176.200, 176.200, 90.00, 90.00, 90.00
R / Rfree (%)	19.9 / 24.2

The binding sites of Zinc atom in the Insights Into Molecular Plasticity in Protein Complexes From TRM9- TRM112 Trna Modifying Enzyme Crystal Structure (pdb code 5cm2). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Insights Into Molecular Plasticity in Protein Complexes From TRM9- TRM112 Trna Modifying Enzyme Crystal Structure, PDB code: 5cm2:

Zinc binding site 1 out of 1 in the Insights Into Molecular Plasticity in Protein Complexes From TRM9- TRM112 Trna Modifying Enzyme Crystal Structure


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Insights Into Molecular Plasticity in Protein Complexes From TRM9- TRM112 Trna Modifying Enzyme Crystal Structure within 5.0Å range: probe atom residue distance (Å) B Occ M:Zn201 b:76.6 occ:1.00 SG M:CYS16 2.2 65.5 1.0 SG M:CYS106 2.4 74.0 1.0 SG M:CYS11 2.6 81.0 1.0 SG M:CYS109 2.7 84.5 1.0 CB M:CYS16 3.1 76.0 1.0 CB M:CYS109 3.1 79.0 1.0 CB M:CYS106 3.3 68.3 1.0 CB M:CYS11 3.5 77.7 1.0 N M:CYS109 3.7 81.6 1.0 CB M:SER13 4.0 76.2 1.0 CA M:CYS109 4.0 79.1 1.0 ND2 M:ASN108 4.5 79.3 1.0 CA M:CYS16 4.5 77.0 1.0 CB M:ASN108 4.6 75.5 1.0 C M:ASN108 4.6 84.6 1.0 CA M:CYS106 4.7 70.7 1.0 OG M:SER13 4.7 80.0 1.0 N M:ASN108 4.9 81.0 1.0 N M:CYS16 4.9 72.2 1.0 CA M:CYS11 5.0 67.2 1.0 CA M:ASN108 5.0 81.9 1.0 OH M:TYR113 5.0 65.0 1.0

J.Letoquart, N.Van Tran, V.Caroline, A.Aleksandrov, N.Lazar, H.Van Tilbeurgh, D.Liger, M.Graille. Insights Into Molecular Plasticity in Protein Complexes From TRM9-TRM112 Trna Modifying Enzyme Crystal Structure. Nucleic Acids Res. V. 43 10989 2015.
ISSN: ESSN 1362-4962
PubMed: 26438534
DOI: 10.1093/NAR/GKV1009