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Zinc in PDB 2d30: Crystal Structure of Cytidine Deaminase Cdd-2 (BA4525) From Bacillus Anthracis at 2.40A Resolution

Enzymatic activity of Crystal Structure of Cytidine Deaminase Cdd-2 (BA4525) From Bacillus Anthracis at 2.40A Resolution

All present enzymatic activity of Crystal Structure of Cytidine Deaminase Cdd-2 (BA4525) From Bacillus Anthracis at 2.40A Resolution:
3.5.4.5;

Protein crystallography data

The structure of Crystal Structure of Cytidine Deaminase Cdd-2 (BA4525) From Bacillus Anthracis at 2.40A Resolution, PDB code: 2d30 was solved by V.M.Levdikov, E.V.Blagova, M.J.Fogg, J.A.Brannigan, O.V.Moroz, A.J.Wilkinson, K.S.Wilson, Structural Proteomics In Europe (Spine), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.89 / 2.40
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 99.792, 50.552, 70.438, 90.00, 132.10, 90.00
R / Rfree (%) 16.4 / 25.1

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Cytidine Deaminase Cdd-2 (BA4525) From Bacillus Anthracis at 2.40A Resolution (pdb code 2d30). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Cytidine Deaminase Cdd-2 (BA4525) From Bacillus Anthracis at 2.40A Resolution, PDB code: 2d30:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2d30

Go back to Zinc Binding Sites List in 2d30
Zinc binding site 1 out of 2 in the Crystal Structure of Cytidine Deaminase Cdd-2 (BA4525) From Bacillus Anthracis at 2.40A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Cytidine Deaminase Cdd-2 (BA4525) From Bacillus Anthracis at 2.40A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2001

b:40.5
occ:1.00
O A:HOH2018 2.3 27.9 1.0
SG A:CYS89 2.4 36.4 1.0
SG A:CYS86 2.5 32.9 1.0
SG A:CYS53 2.5 27.5 1.0
CB A:CYS53 3.1 27.0 1.0
CB A:CYS89 3.2 26.2 1.0
CB A:CYS86 3.6 27.2 1.0
N A:CYS86 3.8 26.6 1.0
N A:CYS89 4.0 23.0 1.0
OE2 A:GLU55 4.1 42.1 1.0
CA A:CYS89 4.1 25.1 1.0
NH1 A:ARG56 4.2 36.2 1.0
CA A:CYS86 4.2 26.1 1.0
OE1 A:GLU55 4.3 36.2 1.0
O A:CYS86 4.4 23.3 1.0
CD A:GLU55 4.4 33.2 1.0
CA A:CYS53 4.5 27.6 1.0
C A:CYS86 4.6 23.7 1.0
CD A:ARG56 4.7 39.3 1.0
C A:PRO85 4.9 26.5 1.0
O A:HOH2004 4.9 31.3 1.0

Zinc binding site 2 out of 2 in 2d30

Go back to Zinc Binding Sites List in 2d30
Zinc binding site 2 out of 2 in the Crystal Structure of Cytidine Deaminase Cdd-2 (BA4525) From Bacillus Anthracis at 2.40A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Cytidine Deaminase Cdd-2 (BA4525) From Bacillus Anthracis at 2.40A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1001

b:45.2
occ:1.00
O B:HOH1037 2.3 27.3 1.0
SG B:CYS89 2.4 33.0 1.0
SG B:CYS53 2.5 36.1 1.0
SG B:CYS86 2.5 31.6 1.0
CB B:CYS89 3.2 26.0 1.0
CB B:CYS53 3.2 25.7 1.0
CB B:CYS86 3.5 26.8 1.0
OE2 B:GLU55 3.8 39.1 1.0
N B:CYS86 3.8 27.9 1.0
N B:CYS89 4.0 21.3 1.0
CA B:CYS89 4.1 23.7 1.0
OE1 B:GLU55 4.2 30.3 1.0
CA B:CYS86 4.2 26.6 1.0
CD B:GLU55 4.2 29.6 1.0
O B:HOH1051 4.3 33.8 1.0
O B:CYS86 4.4 25.8 1.0
C B:CYS86 4.6 24.0 1.0
NH2 B:ARG56 4.6 41.8 1.0
CA B:CYS53 4.6 28.6 1.0
NE B:ARG56 4.9 35.3 1.0
C B:PRO85 4.9 29.2 1.0
O B:HOH1006 5.0 33.9 1.0

Reference:

V.M.Levdikov, E.V.Blagova, M.J.Fogg, J.A.Brannigan, O.V.Moroz, A.J.Wilkinson, K.S.Wilson. Crystal Structure of Cytidine Deaminase Cdd-2 (BA4525) From Bacillus Anthracis at 2.40A Resolution To Be Published.
Page generated: Wed Dec 16 03:20:33 2020

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