Atomistry » Zinc » PDB 2b65-2bmi » 2bib
Atomistry »
  Zinc »
    PDB 2b65-2bmi »
      2bib »

Zinc in PDB 2bib: Crystal Structure of the Complete Modular Teichioic Acid Phosphorylcholine Esterase Pce (Cbpe) From Streptococcus Pneumoniae

Protein crystallography data

The structure of Crystal Structure of the Complete Modular Teichioic Acid Phosphorylcholine Esterase Pce (Cbpe) From Streptococcus Pneumoniae, PDB code: 2bib was solved by J.A.Hermoso, L.Lagartera, A.Gonzalez, P.Garcia, M.Martinez-Ripoll, J.L.Garcia, M.Menendez, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.52 / 1.92
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 173.490, 58.120, 68.650, 90.00, 108.29, 90.00
R / Rfree (%) 19.4 / 23.3

Other elements in 2bib:

The structure of Crystal Structure of the Complete Modular Teichioic Acid Phosphorylcholine Esterase Pce (Cbpe) From Streptococcus Pneumoniae also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Complete Modular Teichioic Acid Phosphorylcholine Esterase Pce (Cbpe) From Streptococcus Pneumoniae (pdb code 2bib). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the Complete Modular Teichioic Acid Phosphorylcholine Esterase Pce (Cbpe) From Streptococcus Pneumoniae, PDB code: 2bib:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2bib

Go back to Zinc Binding Sites List in 2bib
Zinc binding site 1 out of 2 in the Crystal Structure of the Complete Modular Teichioic Acid Phosphorylcholine Esterase Pce (Cbpe) From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Complete Modular Teichioic Acid Phosphorylcholine Esterase Pce (Cbpe) From Streptococcus Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1549

b:25.4
occ:1.00
O3 A:PC1541 2.0 27.5 1.0
OD2 A:ASP89 2.0 22.5 1.0
NE2 A:HIS229 2.1 22.0 1.0
NE2 A:HIS90 2.1 20.5 1.0
OD1 A:ASP203 2.1 23.3 1.0
CD2 A:HIS90 2.9 18.3 1.0
CG A:ASP203 2.9 19.1 1.0
CD2 A:HIS229 2.9 18.9 1.0
CG A:ASP89 3.0 20.7 1.0
OD2 A:ASP203 3.0 19.2 1.0
CE1 A:HIS229 3.1 18.1 1.0
CE1 A:HIS90 3.2 21.0 1.0
OD1 A:ASP89 3.3 21.0 1.0
P1 A:PC1541 3.3 26.5 1.0
ZN A:ZN1550 3.6 27.0 1.0
O A:HOH2017 3.7 20.1 1.0
O4 A:PC1541 3.8 28.2 1.0
CG A:HIS90 4.1 20.3 1.0
CG A:HIS229 4.1 19.3 1.0
ND1 A:HIS229 4.2 18.1 1.0
ND1 A:HIS90 4.2 20.9 1.0
O2 A:PC1541 4.2 28.2 1.0
O1 A:PC1541 4.4 25.6 1.0
CB A:ASP89 4.4 19.8 1.0
CB A:ASP203 4.4 19.1 1.0
NE2 A:HIS85 4.5 21.3 1.0
CE1 A:HIS85 4.5 18.8 1.0
CD2 A:HIS228 4.5 16.1 1.0
O A:GLY17 4.9 20.8 1.0
O A:HOH2224 4.9 19.8 1.0

Zinc binding site 2 out of 2 in 2bib

Go back to Zinc Binding Sites List in 2bib
Zinc binding site 2 out of 2 in the Crystal Structure of the Complete Modular Teichioic Acid Phosphorylcholine Esterase Pce (Cbpe) From Streptococcus Pneumoniae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Complete Modular Teichioic Acid Phosphorylcholine Esterase Pce (Cbpe) From Streptococcus Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1550

b:27.0
occ:1.00
OD1 A:ASN183 2.0 23.5 1.0
O4 A:PC1541 2.0 28.2 1.0
OD1 A:ASP203 2.1 23.3 1.0
ND1 A:HIS87 2.1 19.9 1.0
NE2 A:HIS85 2.1 21.3 1.0
CG A:ASP203 2.9 19.1 1.0
CE1 A:HIS87 3.0 19.2 1.0
CD2 A:HIS85 3.0 16.5 1.0
CG A:ASN183 3.0 21.9 1.0
P1 A:PC1541 3.1 26.5 1.0
CE1 A:HIS85 3.1 18.8 1.0
CG A:HIS87 3.1 19.1 1.0
CB A:ASP203 3.2 19.1 1.0
O3 A:PC1541 3.5 27.5 1.0
ND2 A:ASN183 3.5 17.7 1.0
CB A:HIS87 3.5 18.5 1.0
ZN A:ZN1549 3.6 25.4 1.0
O2 A:PC1541 3.7 28.2 1.0
NE2 A:HIS90 4.0 20.5 1.0
OD2 A:ASP203 4.1 19.2 1.0
CD2 A:HIS90 4.1 18.3 1.0
NE2 A:HIS87 4.1 17.7 1.0
CG A:HIS85 4.2 19.1 1.0
ND1 A:HIS85 4.2 19.2 1.0
CD2 A:HIS87 4.2 18.8 1.0
CB A:ASN183 4.3 20.9 1.0
O1 A:PC1541 4.5 25.6 1.0
O A:HOH2190 4.5 26.6 1.0
CD2 A:HIS228 4.6 16.1 1.0
CA A:ASN183 4.6 20.5 1.0
OD1 A:ASP89 4.6 21.0 1.0
OD2 A:ASP181 4.7 21.2 1.0
CA A:ASP203 4.8 19.3 1.0
N A:ASN183 4.8 20.4 1.0
CE1 A:HIS90 4.9 21.0 1.0
NE2 A:HIS228 4.9 13.7 1.0
OD2 A:ASP89 5.0 22.5 1.0

Reference:

J.A.Hermoso, L.Lagartera, A.Gonzalez, M.Stelter, P.Garcia, M.Martinez-Ripoll, J.L.Garcia, M.Menendez. Insights Into Pneumococcal Pathogenesis From Crystal Structure of the Modular Teichoic Acid Phosphorylcholine Esterase Pce Nat.Struct.Mol.Biol. V. 12 533 2005.
ISSN: ISSN 1545-9993
PubMed: 15895092
DOI: 10.1038/NSMB940
Page generated: Wed Dec 16 03:18:26 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy