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Zinc in PDB 2bcn: Solvent Isotope Effects on Interfacial Protein Electron Transfer Between Cytochrome C and Cytochrome C Peroxidase

Enzymatic activity of Solvent Isotope Effects on Interfacial Protein Electron Transfer Between Cytochrome C and Cytochrome C Peroxidase

All present enzymatic activity of Solvent Isotope Effects on Interfacial Protein Electron Transfer Between Cytochrome C and Cytochrome C Peroxidase:
1.11.1.5;

Protein crystallography data

The structure of Solvent Isotope Effects on Interfacial Protein Electron Transfer Between Cytochrome C and Cytochrome C Peroxidase, PDB code: 2bcn was solved by S.A.Kang, B.R.Crane, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.61 / 1.70
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 44.533, 47.089, 84.289, 102.47, 98.74, 102.16
R / Rfree (%) 21.9 / 23

Other elements in 2bcn:

The structure of Solvent Isotope Effects on Interfacial Protein Electron Transfer Between Cytochrome C and Cytochrome C Peroxidase also contains other interesting chemical elements:

Iron (Fe) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Solvent Isotope Effects on Interfacial Protein Electron Transfer Between Cytochrome C and Cytochrome C Peroxidase (pdb code 2bcn). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solvent Isotope Effects on Interfacial Protein Electron Transfer Between Cytochrome C and Cytochrome C Peroxidase, PDB code: 2bcn:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2bcn

Go back to Zinc Binding Sites List in 2bcn
Zinc binding site 1 out of 2 in the Solvent Isotope Effects on Interfacial Protein Electron Transfer Between Cytochrome C and Cytochrome C Peroxidase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solvent Isotope Effects on Interfacial Protein Electron Transfer Between Cytochrome C and Cytochrome C Peroxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn295

b:21.4
occ:1.00
ZN A:ZNH295 0.0 21.4 1.0
NA A:ZNH295 2.0 21.1 1.0
ND A:ZNH295 2.1 22.2 1.0
NC A:ZNH295 2.1 21.3 1.0
NB A:ZNH295 2.1 21.5 1.0
NE2 A:HIS175 2.2 24.6 1.0
C1A A:ZNH295 3.0 22.1 1.0
C4A A:ZNH295 3.1 22.7 1.0
CD2 A:HIS175 3.1 23.1 1.0
C4D A:ZNH295 3.1 22.1 1.0
C1D A:ZNH295 3.1 20.2 1.0
C1C A:ZNH295 3.1 23.3 1.0
C4B A:ZNH295 3.1 22.6 1.0
C1B A:ZNH295 3.1 21.7 1.0
C4C A:ZNH295 3.1 22.9 1.0
CE1 A:HIS175 3.3 24.6 1.0
CHA A:ZNH295 3.4 20.9 1.0
CHC A:ZNH295 3.4 23.5 1.0
CHB A:ZNH295 3.4 23.0 1.0
CHD A:ZNH295 3.4 22.1 1.0
O A:HOH1143 3.9 26.5 1.0
NE1 A:TRP51 4.1 25.5 1.0
C2A A:ZNH295 4.3 21.6 1.0
CG A:HIS175 4.3 24.2 1.0
C3A A:ZNH295 4.3 22.2 1.0
C2D A:ZNH295 4.3 24.0 1.0
C3D A:ZNH295 4.3 22.7 1.0
C2B A:ZNH295 4.3 22.9 1.0
ND1 A:HIS175 4.3 23.3 1.0
C2C A:ZNH295 4.3 21.9 1.0
C3B A:ZNH295 4.4 22.5 1.0
C3C A:ZNH295 4.4 23.0 1.0
CD1 A:TRP51 4.5 25.9 1.0
O A:HOH1515 4.5 24.2 1.0
CH2 A:TRP191 4.9 22.2 1.0

Zinc binding site 2 out of 2 in 2bcn

Go back to Zinc Binding Sites List in 2bcn
Zinc binding site 2 out of 2 in the Solvent Isotope Effects on Interfacial Protein Electron Transfer Between Cytochrome C and Cytochrome C Peroxidase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solvent Isotope Effects on Interfacial Protein Electron Transfer Between Cytochrome C and Cytochrome C Peroxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn295

b:20.1
occ:1.00
ZN C:ZNH295 0.0 20.1 1.0
NC C:ZNH295 2.1 21.8 1.0
ND C:ZNH295 2.1 20.1 1.0
NE2 C:HIS175 2.1 21.8 1.0
NA C:ZNH295 2.1 22.6 1.0
NB C:ZNH295 2.1 21.9 1.0
CD2 C:HIS175 3.0 25.1 1.0
C1D C:ZNH295 3.0 19.8 1.0
C4D C:ZNH295 3.0 19.8 1.0
C1C C:ZNH295 3.1 20.6 1.0
C1A C:ZNH295 3.1 21.3 1.0
C1B C:ZNH295 3.1 21.7 1.0
C4C C:ZNH295 3.1 22.1 1.0
C4B C:ZNH295 3.1 22.4 1.0
CE1 C:HIS175 3.1 27.0 1.0
C4A C:ZNH295 3.1 22.6 1.0
CHA C:ZNH295 3.3 19.8 1.0
CHC C:ZNH295 3.4 23.2 1.0
CHD C:ZNH295 3.4 20.7 1.0
CHB C:ZNH295 3.4 23.1 1.0
O C:HOH1454 3.6 36.7 1.0
NE1 C:TRP51 4.2 25.3 1.0
CG C:HIS175 4.2 23.7 1.0
ND1 C:HIS175 4.2 23.0 1.0
C2D C:ZNH295 4.2 21.1 1.0
O C:HOH1209 4.2 30.2 1.0
C3D C:ZNH295 4.2 19.5 1.0
C2A C:ZNH295 4.2 21.5 1.0
C3A C:ZNH295 4.3 20.6 1.0
C2C C:ZNH295 4.3 23.3 1.0
C3C C:ZNH295 4.4 22.7 1.0
C2B C:ZNH295 4.4 21.7 1.0
C3B C:ZNH295 4.4 23.6 1.0
CD1 C:TRP51 4.5 23.6 1.0
CH2 C:TRP191 4.9 23.4 1.0

Reference:

S.A.Kang, K.R.Hoke, B.R.Crane. Solvent Isotope Effects on Interfacial Protein Electron Transfer in Crystals and Electrode Films. J.Am.Chem.Soc. V. 128 2346 2006.
ISSN: ISSN 0002-7863
PubMed: 16478190
DOI: 10.1021/JA0557482
Page generated: Wed Dec 16 03:18:20 2020

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