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Zinc in PDB 1v8w: Crystal Structure Analysis of the Adp-Ribose Pyrophosphatase of E82Q Mutant, Complexed with SO4 and Zn

Enzymatic activity of Crystal Structure Analysis of the Adp-Ribose Pyrophosphatase of E82Q Mutant, Complexed with SO4 and Zn

All present enzymatic activity of Crystal Structure Analysis of the Adp-Ribose Pyrophosphatase of E82Q Mutant, Complexed with SO4 and Zn:
3.6.1.13;

Protein crystallography data

The structure of Crystal Structure Analysis of the Adp-Ribose Pyrophosphatase of E82Q Mutant, Complexed with SO4 and Zn, PDB code: 1v8w was solved by S.Yoshiba, T.Ooga, N.Nakagawa, T.Shibata, Y.Inoue, S.Yokoyama, S.Kuramitsu, R.Masui, Riken Structural Genomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.90 / 1.66
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 49.850, 49.850, 118.560, 90.00, 90.00, 120.00
R / Rfree (%) 22.1 / 22.7

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure Analysis of the Adp-Ribose Pyrophosphatase of E82Q Mutant, Complexed with SO4 and Zn (pdb code 1v8w). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure Analysis of the Adp-Ribose Pyrophosphatase of E82Q Mutant, Complexed with SO4 and Zn, PDB code: 1v8w:

Zinc binding site 1 out of 1 in 1v8w

Go back to Zinc Binding Sites List in 1v8w
Zinc binding site 1 out of 1 in the Crystal Structure Analysis of the Adp-Ribose Pyrophosphatase of E82Q Mutant, Complexed with SO4 and Zn


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure Analysis of the Adp-Ribose Pyrophosphatase of E82Q Mutant, Complexed with SO4 and Zn within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn300

b:70.7
occ:1.00
OE2 A:GLU70 2.1 36.2 1.0
OE1 A:GLU70 2.5 36.9 1.0
CD A:GLU70 2.5 32.3 1.0
CG A:GLU70 4.0 30.0 1.0
O A:HOH633 4.1 30.6 1.0

Reference:

S.Yoshiba, T.Ooga, N.Nakagawa, T.Shibata, Y.Inoue, S.Yokoyama, S.Kuramitsu, R.Masui. Structural Insights Into the Thermus Thermophilus Adp-Ribose Pyrophosphatase Mechanism Via Crystal Structures with the Bound Substrate and Metal J.Biol.Chem. V. 279 37163 2004.
ISSN: ISSN 0021-9258
PubMed: 15210687
DOI: 10.1074/JBC.M403817200
Page generated: Wed Dec 16 03:07:51 2020

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