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Zinc in PDB 1v87: Solution Structure of the Ring-H2 Finger Domain of Mouse Deltex Protein 2

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of the Ring-H2 Finger Domain of Mouse Deltex Protein 2 (pdb code 1v87). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the Ring-H2 Finger Domain of Mouse Deltex Protein 2, PDB code: 1v87:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1v87

Go back to Zinc Binding Sites List in 1v87
Zinc binding site 1 out of 2 in the Solution Structure of the Ring-H2 Finger Domain of Mouse Deltex Protein 2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Ring-H2 Finger Domain of Mouse Deltex Protein 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:0.0
occ:1.00
SG A:CYS69 2.3 0.0 1.0
SG A:CYS28 2.3 0.0 1.0
ND1 A:HIS66 2.3 0.0 1.0
SG A:CYS31 2.3 0.0 1.0
HB2 A:HIS66 2.7 0.0 1.0
CG A:HIS66 3.1 0.0 1.0
HB3 A:CYS28 3.1 0.0 1.0
CE1 A:HIS66 3.2 0.0 1.0
HB3 A:CYS31 3.2 0.0 1.0
CB A:CYS28 3.2 0.0 1.0
CB A:HIS66 3.4 0.0 1.0
CB A:CYS31 3.4 0.0 1.0
HB2 A:CYS28 3.4 0.0 1.0
H A:CYS31 3.5 0.0 1.0
HB2 A:CYS69 3.5 0.0 1.0
HE1 A:HIS66 3.5 0.0 1.0
CB A:CYS69 3.5 0.0 1.0
HB A:ILE30 3.5 0.0 1.0
H A:GLY40 3.7 0.0 1.0
HB3 A:CYS69 3.8 0.0 1.0
H A:HIS66 3.8 0.0 1.0
HA A:SER39 3.8 0.0 1.0
HB3 A:HIS66 4.0 0.0 1.0
N A:CYS31 4.0 0.0 1.0
OG A:SER39 4.1 0.0 1.0
CD2 A:HIS66 4.1 0.0 1.0
NE2 A:HIS66 4.1 0.0 1.0
HB2 A:CYS31 4.2 0.0 1.0
CA A:CYS31 4.3 0.0 1.0
HB2 A:SER39 4.4 0.0 1.0
HD12 A:ILE30 4.4 0.0 1.0
HB2 A:GLU33 4.5 0.0 1.0
HG22 A:ILE30 4.5 0.0 1.0
N A:HIS66 4.5 0.0 1.0
HD1 A:TYR41 4.6 0.0 1.0
CB A:ILE30 4.6 0.0 1.0
CB A:SER39 4.6 0.0 1.0
CA A:HIS66 4.6 0.0 1.0
N A:GLY40 4.6 0.0 1.0
CA A:SER39 4.6 0.0 1.0
CA A:CYS28 4.7 0.0 1.0
H A:CYS69 4.7 0.0 1.0
H A:GLU33 4.7 0.0 1.0
HD21 A:LEU35 4.9 0.0 1.0
HG A:SER39 4.9 0.0 1.0
CA A:CYS69 4.9 0.0 1.0
HD1 A:PHE65 4.9 0.0 1.0
C A:ILE30 4.9 0.0 1.0
H A:ILE30 5.0 0.0 1.0
HE2 A:HIS66 5.0 0.0 1.0
HD2 A:HIS66 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 1v87

Go back to Zinc Binding Sites List in 1v87
Zinc binding site 2 out of 2 in the Solution Structure of the Ring-H2 Finger Domain of Mouse Deltex Protein 2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Ring-H2 Finger Domain of Mouse Deltex Protein 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:0.0
occ:1.00
ND1 A:HIS63 2.3 0.0 1.0
SG A:CYS61 2.3 0.0 1.0
SG A:CYS88 2.3 0.0 1.0
SG A:CYS85 2.3 0.0 1.0
H A:CYS88 2.7 0.0 1.0
HB3 A:SER87 2.8 0.0 1.0
HB2 A:HIS63 2.9 0.0 1.0
CG A:HIS63 3.0 0.0 1.0
CE1 A:HIS63 3.1 0.0 1.0
HB3 A:CYS85 3.1 0.0 1.0
CB A:CYS85 3.2 0.0 1.0
CB A:HIS63 3.4 0.0 1.0
HE1 A:HIS63 3.4 0.0 1.0
HB3 A:CYS88 3.5 0.0 1.0
HB2 A:CYS85 3.5 0.0 1.0
HB2 A:CYS61 3.5 0.0 1.0
CB A:CYS61 3.5 0.0 1.0
CB A:CYS88 3.5 0.0 1.0
N A:CYS88 3.6 0.0 1.0
HD12 A:LEU58 3.7 0.0 1.0
HB3 A:CYS61 3.8 0.0 1.0
HB3 A:HIS63 3.8 0.0 1.0
HE2 A:PHE65 3.8 0.0 1.0
CB A:SER87 3.8 0.0 1.0
CD2 A:HIS63 3.9 0.0 1.0
NE2 A:HIS63 3.9 0.0 1.0
HD13 A:LEU58 4.0 0.0 1.0
H A:SER87 4.1 0.0 1.0
CA A:CYS88 4.1 0.0 1.0
HG A:SER87 4.1 0.0 1.0
CD1 A:LEU58 4.2 0.0 1.0
OG A:SER87 4.3 0.0 1.0
HD11 A:LEU58 4.3 0.0 1.0
HH A:TYR92 4.4 0.0 1.0
HB2 A:CYS88 4.4 0.0 1.0
HB2 A:SER87 4.4 0.0 1.0
HB A:THR90 4.5 0.0 1.0
H A:LYS89 4.5 0.0 1.0
C A:SER87 4.5 0.0 1.0
CA A:SER87 4.6 0.0 1.0
H A:HIS63 4.6 0.0 1.0
H A:THR90 4.6 0.0 1.0
CA A:CYS85 4.7 0.0 1.0
HE2 A:HIS63 4.7 0.0 1.0
CE2 A:PHE65 4.8 0.0 1.0
N A:SER87 4.8 0.0 1.0
CA A:HIS63 4.8 0.0 1.0
HD2 A:HIS63 4.8 0.0 1.0
CA A:CYS61 4.9 0.0 1.0
H A:CYS61 4.9 0.0 1.0
HA A:CYS88 5.0 0.0 1.0
N A:HIS63 5.0 0.0 1.0
C A:CYS88 5.0 0.0 1.0

Reference:

K.Miyamoto, Y.Muto, N.Tochio, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama. Solution Structure of the Ring-H2 Finger Domain of Mouse Deltex Protein 2 To Be Published.
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