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Zinc in PDB 1r2y: Mutm (Fpg) Bound to 8-Oxoguanine (Oxog) Containing Dna

Protein crystallography data

The structure of Mutm (Fpg) Bound to 8-Oxoguanine (Oxog) Containing Dna, PDB code: 1r2y was solved by J.C.Fromme, G.L.Verdine, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.34
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 44.290, 93.634, 102.221, 90.00, 90.00, 90.00
R / Rfree (%) 21.1 / 25.7

Zinc Binding Sites:

The binding sites of Zinc atom in the Mutm (Fpg) Bound to 8-Oxoguanine (Oxog) Containing Dna (pdb code 1r2y). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Mutm (Fpg) Bound to 8-Oxoguanine (Oxog) Containing Dna, PDB code: 1r2y:

Zinc binding site 1 out of 1 in 1r2y

Go back to Zinc Binding Sites List in 1r2y
Zinc binding site 1 out of 1 in the Mutm (Fpg) Bound to 8-Oxoguanine (Oxog) Containing Dna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Mutm (Fpg) Bound to 8-Oxoguanine (Oxog) Containing Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn300

b:24.2
occ:1.00
SG A:CYS269 2.3 22.3 1.0
SG A:CYS272 2.3 19.6 1.0
SG A:CYS252 2.4 21.1 1.0
SG A:CYS249 2.4 21.9 1.0
CB A:CYS249 3.1 20.9 1.0
CB A:CYS272 3.3 20.2 1.0
CB A:CYS269 3.4 22.3 1.0
CB A:CYS252 3.5 21.1 1.0
N A:CYS272 3.8 21.6 1.0
N A:CYS252 3.8 23.3 1.0
CA A:CYS272 4.1 22.0 1.0
CE1 A:PHE182 4.2 24.6 1.0
CA A:CYS252 4.2 21.7 1.0
CZ A:PHE182 4.5 24.8 1.0
CB A:ARG271 4.5 22.8 1.0
CA A:CYS249 4.6 23.5 1.0
CB A:ARG251 4.6 26.5 1.0
C A:ARG251 4.8 25.8 1.0
CA A:CYS269 4.8 21.2 1.0
CB A:THR254 4.8 17.7 1.0
C A:CYS252 4.8 20.1 1.0
C A:ARG271 4.9 22.4 1.0
N A:GLY253 4.9 19.8 1.0
N A:ARG251 4.9 25.7 1.0
N A:THR254 4.9 18.6 1.0
OG1 A:THR254 4.9 17.9 1.0

Reference:

J.C.Fromme, G.L.Verdine. Dna Lesion Recognition By the Bacterial Repair Enzyme Mutm. J.Biol.Chem. V. 278 51543 2003.
ISSN: ISSN 0021-9258
PubMed: 14525999
DOI: 10.1074/JBC.M307768200
Page generated: Wed Dec 16 03:02:26 2020

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