Zinc in PDB 1job: Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P3121

The structure of Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P3121, PDB code: 1job was solved by P.Smith, J.F.Hunt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.00 / 2.40
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	86.327, 86.327, 71.574, 90.00, 90.00, 120.00
R / Rfree (%)	23.4 / 26.4

The binding sites of Zinc atom in the Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P3121 (pdb code 1job). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P3121, PDB code: 1job:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in the Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P3121


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P3121 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:0.8 occ:1.00 OE2 A:GLU224 3.1 51.2 1.0 OE1 A:GLU224 3.1 53.8 1.0 CD A:GLU224 3.5 50.3 1.0 OD2 A:ASP201 4.4 56.2 1.0 CD A:PRO202 4.4 51.8 1.0 O A:HOH648 4.8 94.0 1.0 OD1 A:ASP221 4.8 25.8 1.0 CG A:PRO202 4.8 54.9 1.0

Zinc binding site 2 out of 6 in the Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P3121


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P3121 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn302 b:64.0 occ:1.00 OD2 A:ASP221 2.1 39.6 1.0 CG A:ASP221 2.7 29.9 1.0 OD1 A:ASP221 2.7 25.8 1.0 O A:HOH504 3.7 50.2 1.0 O A:HOH538 3.9 76.3 1.0 CB A:ASP221 4.2 27.6 1.0 O A:HOH648 4.3 94.0 1.0 CB A:PRO202 4.8 51.5 1.0 O A:HOH558 4.9 68.8 1.0

Zinc binding site 3 out of 6 in the Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P3121


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P3121 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn303 b:0.3 occ:0.40 O A:HOH619 2.4 0.5 1.0 OD1 A:ASP141 2.6 80.1 1.0 O A:HOH545 3.7 94.5 1.0 CG A:ASP141 3.8 76.7 1.0 CB A:ASP141 4.6 72.8 1.0 OD2 A:ASP141 4.7 77.5 1.0 CA A:ASP141 4.8 70.1 1.0

Zinc binding site 4 out of 6 in the Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P3121


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P3121 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn304 b:64.1 occ:1.00 O A:HOH515 2.3 43.4 1.0 NZ A:LYS108 2.4 61.1 1.0 OD1 A:ASP104 2.5 43.5 1.0 OD1 A:ASP166 2.6 44.0 1.0 ZN A:ZN305 2.9 49.7 1.0 CG A:ASP104 3.3 57.5 1.0 OD2 A:ASP104 3.4 54.2 1.0 CG A:ASP166 3.5 45.8 1.0 OD2 A:ASP166 3.8 45.7 1.0 CE A:LYS108 3.8 67.7 1.0 O A:HOH602 4.4 97.3 1.0 ND2 A:ASN261 4.7 44.5 1.0 CB A:ASP104 4.8 61.3 1.0 O A:HOH536 4.8 42.1 1.0 O A:ASP166 4.9 40.9 1.0 CB A:ASP166 4.9 45.8 1.0

Zinc binding site 5 out of 6 in the Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P3121


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P3121 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn305 b:49.7 occ:1.00 OD2 A:ASP166 2.2 45.7 1.0 O A:HOH515 2.7 43.4 1.0 CG A:ASP166 2.9 45.8 1.0 ZN A:ZN304 2.9 64.1 1.0 OD1 A:ASP166 3.0 44.0 1.0 ND1 A:HIS167 3.7 39.6 1.0 O A:ASP166 4.1 40.9 1.0 CB A:ASP166 4.3 45.8 1.0 CE1 A:HIS167 4.3 39.3 1.0 NE2 A:GLN110 4.3 46.6 1.0 CG A:HIS167 4.3 41.3 1.0 NZ A:LYS108 4.4 61.1 1.0 O A:HOH536 4.6 42.1 1.0 C A:ASP166 4.6 40.7 1.0 CB A:HIS167 4.6 38.1 1.0 CA A:ASP166 4.9 42.8 1.0 OD1 A:ASP104 5.0 43.5 1.0

Zinc binding site 6 out of 6 in the Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P3121


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P3121 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn306 b:50.7 occ:1.00 O A:HOH642 2.1 39.7 1.0 O A:HOH528 2.2 45.6 1.0 OD2 A:ASP118 2.6 46.3 1.0 OD1 A:ASP118 2.6 48.6 1.0 OD2 A:ASP120 2.6 58.5 1.0 CG A:ASP118 2.9 48.7 1.0 OD1 A:ASP120 3.0 67.1 1.0 CG A:ASP120 3.2 63.4 1.0 O A:HOH552 3.7 52.0 1.0 O A:HOH529 3.7 96.7 1.0 O A:HOH611 4.0 97.6 1.0 NH1 A:ARG154 4.4 58.5 1.0 CB A:ASP118 4.4 50.9 1.0 CB A:ASP120 4.7 55.8 1.0 CB A:LEU121 4.7 47.1 1.0 N A:LEU121 4.8 47.8 1.0 CD A:ARG154 4.9 44.5 1.0 CA A:ASP118 5.0 55.3 1.0

P.C.Smith, S.Firestein, J.F.Hunt. The Crystal Structure of the Olfactory Marker Protein at 2.3 A Resolution. J.Mol.Biol. V. 319 807 2002.
ISSN: ISSN 0022-2836
PubMed: 12054872
DOI: 10.1016/S0022-2836(02)00242-5