Zinc in PDB 1x4k: Solution Structure of Lim Domain in Lim-Protein 3

The binding sites of Zinc atom in the Solution Structure of Lim Domain in Lim-Protein 3 (pdb code 1x4k). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of Lim Domain in Lim-Protein 3, PDB code: 1x4k:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Solution Structure of Lim Domain in Lim-Protein 3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of Lim Domain in Lim-Protein 3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:0.0 occ:1.00 SG A:CYS11 2.3 0.0 1.0 SG A:CYS33 2.3 0.0 1.0 SG A:CYS8 2.3 0.0 1.0 ND1 A:HIS30 2.4 0.0 1.0 H A:CYS11 2.5 0.0 1.0 HB3 A:GLU10 2.9 0.0 1.0 HB2 A:HIS30 2.9 0.0 1.0 CE1 A:HIS30 3.3 0.0 1.0 CB A:CYS8 3.3 0.0 1.0 CG A:HIS30 3.4 0.0 1.0 HB2 A:CYS33 3.4 0.0 1.0 HB3 A:CYS8 3.4 0.0 1.0 CB A:CYS33 3.4 0.0 1.0 N A:CYS11 3.4 0.0 1.0 HB2 A:CYS8 3.4 0.0 1.0 HE1 A:HIS30 3.4 0.0 1.0 H A:HIS30 3.5 0.0 1.0 CB A:CYS11 3.5 0.0 1.0 HB3 A:CYS11 3.6 0.0 1.0 HB3 A:CYS33 3.6 0.0 1.0 CB A:HIS30 3.7 0.0 1.0 OE1 A:GLU10 3.8 0.0 1.0 CB A:GLU10 3.9 0.0 1.0 HB2 A:LYS13 4.0 0.0 1.0 CA A:CYS11 4.0 0.0 1.0 H A:LYS13 4.1 0.0 1.0 H A:GLU10 4.2 0.0 1.0 N A:HIS30 4.3 0.0 1.0 HB2 A:GLU10 4.3 0.0 1.0 HB3 A:HIS30 4.4 0.0 1.0 NE2 A:HIS30 4.4 0.0 1.0 HB2 A:CYS11 4.4 0.0 1.0 C A:GLU10 4.5 0.0 1.0 CD2 A:HIS30 4.5 0.0 1.0 H A:LYS12 4.5 0.0 1.0 CA A:GLU10 4.6 0.0 1.0 N A:GLU10 4.6 0.0 1.0 C A:CYS11 4.6 0.0 1.0 CA A:HIS30 4.6 0.0 1.0 CD A:GLU10 4.6 0.0 1.0 H A:CYS33 4.7 0.0 1.0 CG A:GLU10 4.8 0.0 1.0 N A:LYS12 4.8 0.0 1.0 CA A:CYS8 4.8 0.0 1.0 HG12 A:ILE15 4.8 0.0 1.0 H A:GLN9 4.8 0.0 1.0 CA A:CYS33 4.8 0.0 1.0 HG3 A:LYS13 4.8 0.0 1.0 HA A:TRP29 4.8 0.0 1.0 HA A:CYS11 4.9 0.0 1.0 HG3 A:GLU10 5.0 0.0 1.0 N A:LYS13 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the Solution Structure of Lim Domain in Lim-Protein 3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of Lim Domain in Lim-Protein 3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:0.0 occ:1.00 SG A:CYS60 2.3 0.0 1.0 SG A:CYS57 2.3 0.0 1.0 SG A:CYS39 2.3 0.0 1.0 SG A:CYS36 2.4 0.0 1.0 H A:CYS57 2.9 0.0 1.0 H A:CYS39 2.9 0.0 1.0 HB2 A:CYS36 3.2 0.0 1.0 HB2 A:CYS60 3.2 0.0 1.0 HB2 A:CYS57 3.2 0.0 1.0 CB A:CYS36 3.2 0.0 1.0 HB3 A:CYS39 3.3 0.0 1.0 HB3 A:CYS36 3.3 0.0 1.0 CB A:CYS60 3.4 0.0 1.0 CB A:CYS57 3.4 0.0 1.0 CB A:CYS39 3.5 0.0 1.0 HB3 A:ARG38 3.5 0.0 1.0 HB3 A:CYS60 3.7 0.0 1.0 N A:CYS39 3.8 0.0 1.0 N A:CYS57 3.8 0.0 1.0 H A:ARG38 4.1 0.0 1.0 CA A:CYS39 4.2 0.0 1.0 HA A:PHE56 4.2 0.0 1.0 CA A:CYS57 4.2 0.0 1.0 HB3 A:CYS57 4.3 0.0 1.0 HB2 A:CYS39 4.3 0.0 1.0 CB A:ARG38 4.5 0.0 1.0 HD11 A:ILE43 4.5 0.0 1.0 H A:CYS60 4.5 0.0 1.0 HG2 A:PRO59 4.6 0.0 1.0 H A:GLN40 4.6 0.0 1.0 HB2 A:ARG38 4.6 0.0 1.0 HB2 A:GLN41 4.6 0.0 1.0 H A:GLN41 4.6 0.0 1.0 CA A:CYS36 4.7 0.0 1.0 CA A:CYS60 4.7 0.0 1.0 HG12 A:ILE43 4.8 0.0 1.0 C A:ARG38 4.8 0.0 1.0 H A:HIS37 4.9 0.0 1.0 N A:ARG38 4.9 0.0 1.0 HD3 A:ARG38 4.9 0.0 1.0 C A:PHE56 4.9 0.0 1.0 HA A:CYS36 5.0 0.0 1.0 HD2 A:PHE56 5.0 0.0 1.0 CA A:ARG38 5.0 0.0 1.0 HA A:CYS57 5.0 0.0 1.0 N A:CYS60 5.0 0.0 1.0

F.He, Y.Muto, M.Inoue, T.Kigawa, M.Shirouzu, T.Terada, S.Yokoyama. Solution Structure of Lim Domain in Lim-Protein 3 To Be Published.