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Zinc in PDB 1x4l: Solution Structure of Lim Domain in Four and A Half Lim Domains Protein 2

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of Lim Domain in Four and A Half Lim Domains Protein 2 (pdb code 1x4l). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of Lim Domain in Four and A Half Lim Domains Protein 2, PDB code: 1x4l:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1x4l

Go back to Zinc Binding Sites List in 1x4l
Zinc binding site 1 out of 2 in the Solution Structure of Lim Domain in Four and A Half Lim Domains Protein 2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of Lim Domain in Four and A Half Lim Domains Protein 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:0.0
occ:1.00
ND1 A:HIS32 2.0 0.0 1.0
SG A:CYS35 2.3 0.0 1.0
SG A:CYS11 2.3 0.0 1.0
SG A:CYS8 2.3 0.0 1.0
HB2 A:HIS32 2.7 0.0 1.0
H A:CYS11 2.9 0.0 1.0
CE1 A:HIS32 3.0 0.0 1.0
CG A:HIS32 3.0 0.0 1.0
HB2 A:CYS35 3.1 0.0 1.0
HB3 A:CYS11 3.2 0.0 1.0
HE1 A:HIS32 3.2 0.0 1.0
HB3 A:CYS8 3.3 0.0 1.0
CB A:CYS35 3.3 0.0 1.0
CB A:CYS8 3.3 0.0 1.0
CB A:CYS11 3.4 0.0 1.0
CB A:HIS32 3.4 0.0 1.0
HB2 A:CYS8 3.4 0.0 1.0
HB3 A:CYS35 3.6 0.0 1.0
N A:CYS11 3.7 0.0 1.0
H A:HIS32 3.8 0.0 1.0
NE2 A:HIS32 4.1 0.0 1.0
CD2 A:HIS32 4.1 0.0 1.0
HB3 A:HIS32 4.1 0.0 1.0
CA A:CYS11 4.2 0.0 1.0
N A:HIS32 4.2 0.0 1.0
HB2 A:CYS11 4.2 0.0 1.0
H A:CYS35 4.3 0.0 1.0
HA3 A:GLY10 4.4 0.0 1.0
CA A:HIS32 4.4 0.0 1.0
HA A:TRP31 4.6 0.0 1.0
H A:GLY10 4.6 0.0 1.0
CA A:CYS35 4.6 0.0 1.0
HB2 A:ASN13 4.7 0.0 1.0
CA A:CYS8 4.7 0.0 1.0
C A:GLY10 4.8 0.0 1.0
HG12 A:ILE15 4.9 0.0 1.0
N A:CYS35 4.9 0.0 1.0
HE2 A:HIS32 4.9 0.0 1.0
CA A:GLY10 5.0 0.0 1.0
H A:ASN13 5.0 0.0 1.0
C A:TRP31 5.0 0.0 1.0
HA A:CYS11 5.0 0.0 1.0
HA A:HIS32 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 1x4l

Go back to Zinc Binding Sites List in 1x4l
Zinc binding site 2 out of 2 in the Solution Structure of Lim Domain in Four and A Half Lim Domains Protein 2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of Lim Domain in Four and A Half Lim Domains Protein 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:0.0
occ:1.00
SG A:CYS62 2.2 0.0 1.0
SG A:CYS59 2.3 0.0 1.0
SG A:CYS41 2.4 0.0 1.0
SG A:CYS38 2.4 0.0 1.0
HB2 A:CYS62 2.9 0.0 1.0
H A:CYS41 3.0 0.0 1.0
H A:CYS59 3.1 0.0 1.0
HB2 A:CYS38 3.2 0.0 1.0
CB A:CYS38 3.2 0.0 1.0
CB A:CYS62 3.2 0.0 1.0
HB3 A:CYS38 3.3 0.0 1.0
H A:CYS62 3.4 0.0 1.0
HB3 A:CYS59 3.4 0.0 1.0
HB3 A:CYS41 3.4 0.0 1.0
HB3 A:LYS40 3.5 0.0 1.0
CB A:CYS59 3.5 0.0 1.0
CB A:CYS41 3.5 0.0 1.0
N A:CYS41 3.7 0.0 1.0
N A:CYS59 3.9 0.0 1.0
HB3 A:LEU43 4.0 0.0 1.0
HB3 A:CYS62 4.0 0.0 1.0
H A:LYS40 4.0 0.0 1.0
N A:CYS62 4.1 0.0 1.0
CA A:CYS41 4.2 0.0 1.0
CA A:CYS59 4.2 0.0 1.0
OD2 A:ASP61 4.2 0.0 1.0
CA A:CYS62 4.3 0.0 1.0
HB3 A:ASP61 4.3 0.0 1.0
H A:LEU43 4.3 0.0 1.0
HB2 A:CYS59 4.4 0.0 1.0
HB3 A:LEU58 4.4 0.0 1.0
HB2 A:CYS41 4.4 0.0 1.0
CB A:LYS40 4.4 0.0 1.0
HD22 A:LEU43 4.5 0.0 1.0
HB2 A:LYS40 4.6 0.0 1.0
O A:CYS59 4.6 0.0 1.0
HA A:LEU58 4.6 0.0 1.0
CA A:CYS38 4.7 0.0 1.0
H A:SER42 4.7 0.0 1.0
C A:LYS40 4.7 0.0 1.0
C A:CYS59 4.7 0.0 1.0
HA A:CYS62 4.7 0.0 1.0
N A:LYS40 4.8 0.0 1.0
H A:LYS39 4.8 0.0 1.0
C A:CYS41 4.8 0.0 1.0
HD21 A:LEU58 4.9 0.0 1.0
H A:GLY63 4.9 0.0 1.0
HB2 A:LEU43 4.9 0.0 1.0
CA A:LYS40 4.9 0.0 1.0
CB A:LEU43 4.9 0.0 1.0
HA A:CYS38 4.9 0.0 1.0
CG A:ASP61 5.0 0.0 1.0
C A:LEU58 5.0 0.0 1.0

Reference:

F.He, Y.Muto, M.Inoue, T.Kigawa, M.Shirouzu, T.Terada, S.Yokoyama. Solution Structure of Lim Domain in Four and A Half Lim Domains Protein 2 To Be Published.
Page generated: Wed Oct 16 20:15:35 2024

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