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Zinc in PDB 1jjd: uc(Nmr) Structure of the Cyanobacterial Metallothionein Smta

Zinc Binding Sites:

The binding sites of Zinc atom in the uc(Nmr) Structure of the Cyanobacterial Metallothionein Smta (pdb code 1jjd). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the uc(Nmr) Structure of the Cyanobacterial Metallothionein Smta, PDB code: 1jjd:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 1jjd

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Zinc binding site 1 out of 4 in the uc(Nmr) Structure of the Cyanobacterial Metallothionein Smta


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of uc(Nmr) Structure of the Cyanobacterial Metallothionein Smta within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn101

b:0.0
occ:1.00
SG A:CYS32 2.4 0.0 1.0
SG A:CYS9 2.4 0.0 1.0
SG A:CYS14 2.4 0.0 1.0
SG A:CYS36 2.4 0.0 1.0
H A:CYS32 3.1 0.0 1.0
HB3 A:CYS9 3.3 0.0 1.0
HB3 A:CYS32 3.3 0.0 1.0
CB A:CYS9 3.3 0.0 1.0
HB2 A:CYS11 3.3 0.0 1.0
CB A:CYS36 3.4 0.0 1.0
HB2 A:CYS14 3.4 0.0 1.0
CB A:CYS14 3.4 0.0 1.0
HB2 A:CYS36 3.4 0.0 1.0
HB2 A:CYS9 3.4 0.0 1.0
HB3 A:CYS36 3.4 0.0 1.0
HB3 A:CYS14 3.5 0.0 1.0
CB A:CYS32 3.5 0.0 1.0
ZN A:ZN104 3.6 0.0 1.0
ZN A:ZN103 3.7 0.0 1.0
HB3 A:CYS47 3.8 0.0 1.0
HB2 A:CYS16 3.8 0.0 1.0
ZN A:ZN102 3.9 0.0 1.0
H A:SER33 4.0 0.0 1.0
N A:CYS32 4.0 0.0 1.0
HB2 A:CYS47 4.1 0.0 1.0
H A:CYS11 4.2 0.0 1.0
CB A:CYS47 4.3 0.0 1.0
SG A:CYS47 4.3 0.0 1.0
CA A:CYS32 4.3 0.0 1.0
HB2 A:CYS32 4.4 0.0 1.0
CB A:CYS11 4.4 0.0 1.0
SG A:CYS54 4.5 0.0 1.0
SG A:CYS16 4.6 0.0 1.0
HA A:TYR31 4.7 0.0 1.0
CB A:CYS16 4.7 0.0 1.0
CA A:CYS36 4.8 0.0 1.0
CA A:CYS9 4.8 0.0 1.0
N A:SER33 4.8 0.0 1.0
H A:CYS16 4.8 0.0 1.0
HB3 A:CYS11 4.9 0.0 1.0
CA A:CYS14 4.9 0.0 1.0
H A:CYS36 4.9 0.0 1.0
SG A:CYS11 4.9 0.0 1.0
H A:ALA10 5.0 0.0 1.0
N A:CYS11 5.0 0.0 1.0

Zinc binding site 2 out of 4 in 1jjd

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Zinc binding site 2 out of 4 in the uc(Nmr) Structure of the Cyanobacterial Metallothionein Smta


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of uc(Nmr) Structure of the Cyanobacterial Metallothionein Smta within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn102

b:0.0
occ:1.00
NE2 A:HIS40 1.9 0.0 1.0
SG A:CYS36 2.4 0.0 1.0
SG A:CYS54 2.4 0.0 1.0
SG A:CYS11 2.4 0.0 1.0
CE1 A:HIS40 2.8 0.0 1.0
HA A:CYS36 2.9 0.0 1.0
HE1 A:HIS40 3.0 0.0 1.0
HB2 A:CYS54 3.0 0.0 1.0
CD2 A:HIS40 3.0 0.0 1.0
HB2 A:CYS11 3.1 0.0 1.0
HB3 A:CYS36 3.3 0.0 1.0
CB A:CYS11 3.3 0.0 1.0
CB A:CYS36 3.3 0.0 1.0
CB A:CYS54 3.3 0.0 1.0
HD2 A:HIS40 3.4 0.0 1.0
HB2 A:CYS14 3.4 0.0 1.0
HB3 A:CYS11 3.4 0.0 1.0
CA A:CYS36 3.6 0.0 1.0
HB3 A:CYS47 3.7 0.0 1.0
O A:HIS55 3.8 0.0 1.0
ZN A:ZN101 3.9 0.0 1.0
ZN A:ZN104 3.9 0.0 1.0
ND1 A:HIS40 3.9 0.0 1.0
O A:CYS54 4.0 0.0 1.0
HB3 A:CYS54 4.0 0.0 1.0
CG A:HIS40 4.0 0.0 1.0
N A:CYS36 4.2 0.0 1.0
C A:CYS54 4.3 0.0 1.0
HB2 A:CYS36 4.3 0.0 1.0
CB A:CYS14 4.4 0.0 1.0
CA A:CYS54 4.4 0.0 1.0
H A:CYS36 4.6 0.0 1.0
SG A:CYS14 4.6 0.0 1.0
C A:HIS55 4.7 0.0 1.0
CB A:CYS47 4.8 0.0 1.0
CA A:CYS11 4.8 0.0 1.0
HA2 A:GLY46 4.8 0.0 1.0
C A:ALA35 4.8 0.0 1.0
HB3 A:CYS14 4.8 0.0 1.0
HD1 A:HIS40 4.8 0.0 1.0
O A:ALA35 4.9 0.0 1.0
C A:CYS36 4.9 0.0 1.0
HB2 A:ALA35 4.9 0.0 1.0
N A:HIS55 4.9 0.0 1.0

Zinc binding site 3 out of 4 in 1jjd

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Zinc binding site 3 out of 4 in the uc(Nmr) Structure of the Cyanobacterial Metallothionein Smta


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of uc(Nmr) Structure of the Cyanobacterial Metallothionein Smta within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn103

b:0.0
occ:1.00
NE2 A:HIS49 1.9 0.0 1.0
SG A:CYS47 2.3 0.0 1.0
SG A:CYS16 2.4 0.0 1.0
SG A:CYS32 2.4 0.0 1.0
CE1 A:HIS49 2.8 0.0 1.0
HB2 A:CYS47 2.9 0.0 1.0
CD2 A:HIS49 2.9 0.0 1.0
HE1 A:HIS49 3.1 0.0 1.0
CB A:CYS47 3.2 0.0 1.0
HD2 A:HIS49 3.2 0.0 1.0
HB2 A:CYS32 3.2 0.0 1.0
CB A:CYS16 3.3 0.0 1.0
HB2 A:CYS16 3.3 0.0 1.0
CB A:CYS32 3.4 0.0 1.0
HB3 A:CYS16 3.4 0.0 1.0
SG A:CYS14 3.5 0.0 1.0
ZN A:ZN104 3.6 0.0 1.0
HB3 A:CYS32 3.6 0.0 1.0
ZN A:ZN101 3.7 0.0 1.0
HB3 A:CYS47 3.7 0.0 1.0
ND1 A:HIS49 3.9 0.0 1.0
CG A:HIS49 4.0 0.0 1.0
HB3 A:CYS52 4.4 0.0 1.0
O A:CYS47 4.4 0.0 1.0
CA A:CYS47 4.4 0.0 1.0
HB2 A:CYS52 4.5 0.0 1.0
H A:SER33 4.6 0.0 1.0
H A:CYS16 4.7 0.0 1.0
CA A:CYS16 4.7 0.0 1.0
H A:HIS49 4.7 0.0 1.0
HB2 A:SER33 4.7 0.0 1.0
C A:CYS47 4.8 0.0 1.0
H A:CYS47 4.8 0.0 1.0
CB A:CYS52 4.8 0.0 1.0
CA A:CYS32 4.8 0.0 1.0
SG A:CYS36 4.8 0.0 1.0
HD1 A:HIS49 4.9 0.0 1.0
SG A:CYS52 5.0 0.0 1.0
HA A:CYS16 5.0 0.0 1.0

Zinc binding site 4 out of 4 in 1jjd

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Zinc binding site 4 out of 4 in the uc(Nmr) Structure of the Cyanobacterial Metallothionein Smta


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of uc(Nmr) Structure of the Cyanobacterial Metallothionein Smta within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn104

b:0.0
occ:1.00
SG A:CYS52 2.4 0.0 1.0
SG A:CYS14 2.4 0.0 1.0
SG A:CYS47 2.4 0.0 1.0
SG A:CYS54 2.4 0.0 1.0
HB2 A:CYS14 2.9 0.0 1.0
HA A:CYS14 3.1 0.0 1.0
HB3 A:CYS52 3.1 0.0 1.0
HB3 A:CYS54 3.2 0.0 1.0
HB3 A:CYS47 3.2 0.0 1.0
CB A:CYS14 3.2 0.0 1.0
CB A:CYS52 3.3 0.0 1.0
CB A:CYS54 3.4 0.0 1.0
CB A:CYS47 3.5 0.0 1.0
ZN A:ZN103 3.6 0.0 1.0
ZN A:ZN101 3.6 0.0 1.0
H A:CYS54 3.6 0.0 1.0
HA2 A:GLY46 3.7 0.0 1.0
CA A:CYS14 3.7 0.0 1.0
HB2 A:CYS52 3.8 0.0 1.0
SG A:CYS16 3.8 0.0 1.0
ZN A:ZN102 3.9 0.0 1.0
H A:CYS47 4.0 0.0 1.0
SG A:CYS36 4.0 0.0 1.0
HB2 A:CYS54 4.1 0.0 1.0
H A:LEU15 4.1 0.0 1.0
HB2 A:CYS47 4.2 0.0 1.0
HB3 A:CYS14 4.2 0.0 1.0
N A:CYS47 4.2 0.0 1.0
N A:CYS54 4.3 0.0 1.0
SG A:CYS32 4.4 0.0 1.0
O A:CYS52 4.4 0.0 1.0
HE1 A:HIS40 4.4 0.0 1.0
CA A:CYS54 4.4 0.0 1.0
H A:CYS16 4.5 0.0 1.0
CA A:CYS52 4.6 0.0 1.0
CA A:CYS47 4.6 0.0 1.0
C A:CYS52 4.6 0.0 1.0
HB2 A:CYS11 4.7 0.0 1.0
C A:CYS14 4.7 0.0 1.0
CA A:GLY46 4.7 0.0 1.0
N A:LEU15 4.7 0.0 1.0
N A:CYS14 4.8 0.0 1.0
C A:GLY46 4.8 0.0 1.0
HB2 A:CYS16 4.9 0.0 1.0
HB3 A:CYS11 5.0 0.0 1.0
HA A:CYS52 5.0 0.0 1.0

Reference:

C.A.Blindauer, M.D.Harrison, J.A.Parkinson, A.K.Robinson, J.S.Cavet, N.J.Robinson, P.J.Sadler. A Metallothionein Containing A Zinc Finger Within A Four-Metal Cluster Protects A Bacterium From Zinc Toxicity. Proc.Natl.Acad.Sci.Usa V. 98 9593 2001.
ISSN: ISSN 0027-8424
PubMed: 11493688
DOI: 10.1073/PNAS.171120098
Page generated: Wed Dec 16 02:53:54 2020

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