Atomistry » Zinc » PDB 1vev-1w57 » 1vj0
Atomistry »
  Zinc »
    PDB 1vev-1w57 »
      1vj0 »

Zinc in PDB 1vj0: Crystal Structure of Alcohol Dehydrogenase (TM0436) From Thermotoga Maritima at 2.00 A Resolution

Enzymatic activity of Crystal Structure of Alcohol Dehydrogenase (TM0436) From Thermotoga Maritima at 2.00 A Resolution

All present enzymatic activity of Crystal Structure of Alcohol Dehydrogenase (TM0436) From Thermotoga Maritima at 2.00 A Resolution:
1.1.1.1;

Protein crystallography data

The structure of Crystal Structure of Alcohol Dehydrogenase (TM0436) From Thermotoga Maritima at 2.00 A Resolution, PDB code: 1vj0 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 80.53 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 92.880, 104.919, 161.617, 90.00, 90.00, 90.00
R / Rfree (%) 14.5 / 19.4

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Alcohol Dehydrogenase (TM0436) From Thermotoga Maritima at 2.00 A Resolution (pdb code 1vj0). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 8 binding sites of Zinc where determined in the Crystal Structure of Alcohol Dehydrogenase (TM0436) From Thermotoga Maritima at 2.00 A Resolution, PDB code: 1vj0:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Zinc binding site 1 out of 8 in 1vj0

Go back to Zinc Binding Sites List in 1vj0
Zinc binding site 1 out of 8 in the Crystal Structure of Alcohol Dehydrogenase (TM0436) From Thermotoga Maritima at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Alcohol Dehydrogenase (TM0436) From Thermotoga Maritima at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn400

b:22.7
occ:1.00
 SG A:CYS106 2.3 28.2 1.0
SG A:CYS103 2.4 25.4 1.0
SG A:CYS100 2.4 27.4 1.0
SG A:CYS115 2.4 28.8 1.0
CB A:CYS115 3.2 30.1 1.0
CB A:CYS103 3.4 26.5 1.0
CB A:CYS106 3.5 27.4 1.0
CB A:CYS100 3.6 29.6 1.0
N A:CYS100 3.6 30.2 1.0
N A:CYS103 3.8 26.8 1.0
CA A:CYS115 3.9 28.3 1.0
N A:GLY101 4.0 29.6 1.0
CA A:CYS100 4.0 30.2 1.0
N A:CYS106 4.2 26.0 1.0
CA A:CYS103 4.2 26.1 1.0
C A:CYS100 4.4 30.3 1.0
CA A:CYS106 4.4 26.0 1.0
N A:GLU102 4.4 30.0 1.0
CD A:PRO116 4.5 29.8 1.0
ND2 A:ASN117 4.5 38.2 1.0
CB A:THR99 4.6 31.0 1.0
C A:THR99 4.7 30.5 1.0
C A:CYS115 4.8 28.9 1.0
C A:CYS103 4.9 25.4 1.0
CA A:GLY101 4.9 29.9 1.0
N A:PRO116 4.9 29.8 1.0
C A:GLU102 5.0 28.1 1.0
CA A:THR99 5.0 30.1 1.0

Zinc binding site 2 out of 8 in 1vj0

Go back to Zinc Binding Sites List in 1vj0
Zinc binding site 2 out of 8 in the Crystal Structure of Alcohol Dehydrogenase (TM0436) From Thermotoga Maritima at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Alcohol Dehydrogenase (TM0436) From Thermotoga Maritima at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:35.8
occ:0.34
 OE2 A:GLU66 2.3 41.6 1.0
NE2 A:HIS65 2.3 30.8 1.0
SG A:CYS166 2.3 41.1 0.7
SG A:CYS43 2.5 45.3 1.0
CB A:CYS166 2.8 37.8 0.3
CB A:CYS166 2.8 37.8 0.7
CB A:CYS43 2.9 38.6 1.0
SG A:CYS166 3.0 39.1 0.3
CD2 A:HIS65 3.2 29.6 1.0
CD A:GLU66 3.3 34.0 1.0
CE1 A:HIS65 3.3 29.5 1.0
CG A:GLU66 3.7 35.7 1.0
O A:HOH2182 4.1 59.8 1.0
OG A:SER45 4.3 34.3 1.0
CA A:CYS43 4.3 37.6 1.0
CA A:CYS166 4.3 38.1 1.0
CG A:HIS65 4.3 28.2 1.0
OE1 A:GLU66 4.3 39.2 1.0
ND1 A:HIS65 4.3 27.6 1.0
O A:HOH2180 4.6 40.1 1.0
O A:HOH2179 4.7 38.8 1.0
O A:HOH2020 4.7 20.5 1.0
N A:SER167 4.9 32.9 1.0
C A:CYS166 5.0 36.8 1.0

Zinc binding site 3 out of 8 in 1vj0

Go back to Zinc Binding Sites List in 1vj0
Zinc binding site 3 out of 8 in the Crystal Structure of Alcohol Dehydrogenase (TM0436) From Thermotoga Maritima at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Alcohol Dehydrogenase (TM0436) From Thermotoga Maritima at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn400

b:22.5
occ:1.00
 SG B:CYS103 2.3 26.4 1.0
SG B:CYS106 2.3 28.8 1.0
SG B:CYS100 2.4 28.8 1.0
SG B:CYS115 2.4 27.7 1.0
CB B:CYS115 3.2 26.6 1.0
CB B:CYS103 3.4 28.0 1.0
CB B:CYS106 3.5 27.3 1.0
CB B:CYS100 3.6 30.1 1.0
N B:CYS100 3.7 29.9 1.0
N B:CYS103 3.8 28.7 1.0
N B:GLY101 3.9 30.8 1.0
CA B:CYS115 4.0 27.8 1.0
CA B:CYS100 4.0 30.3 1.0
CA B:CYS103 4.2 27.7 1.0
N B:CYS106 4.2 24.9 1.0
C B:CYS100 4.3 30.8 1.0
N B:GLU102 4.4 32.6 1.0
CA B:CYS106 4.5 26.2 1.0
CD B:PRO116 4.5 28.1 1.0
ND2 B:ASN117 4.5 33.2 1.0
CB B:THR99 4.5 29.3 1.0
C B:THR99 4.7 30.3 1.0
C B:CYS103 4.8 25.8 1.0
CA B:GLY101 4.8 31.9 1.0
C B:CYS115 4.8 27.8 1.0
N B:PRO116 5.0 28.0 1.0
C B:GLU102 5.0 30.0 1.0

Zinc binding site 4 out of 8 in 1vj0

Go back to Zinc Binding Sites List in 1vj0
Zinc binding site 4 out of 8 in the Crystal Structure of Alcohol Dehydrogenase (TM0436) From Thermotoga Maritima at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of Alcohol Dehydrogenase (TM0436) From Thermotoga Maritima at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn401

b:26.3
occ:0.28
 OE2 B:GLU66 2.1 42.3 1.0
NE2 B:HIS65 2.3 29.6 1.0
SG B:CYS166 2.3 39.0 0.7
SG B:CYS43 2.4 43.0 1.0
CB B:CYS43 2.8 35.2 1.0
CB B:CYS166 2.9 37.6 0.3
CB B:CYS166 3.0 38.1 0.7
CD2 B:HIS65 3.2 27.8 1.0
SG B:CYS166 3.2 38.2 0.3
CD B:GLU66 3.2 36.0 1.0
CE1 B:HIS65 3.2 29.9 1.0
CG B:GLU66 3.8 36.1 1.0
OG B:SER45 4.0 33.0 1.0
OE1 B:GLU66 4.1 36.0 1.0
CA B:CYS43 4.2 35.6 1.0
O B:HOH2214 4.3 46.6 1.0
ND1 B:HIS65 4.3 29.0 1.0
CG B:HIS65 4.3 28.8 1.0
CA B:CYS166 4.4 36.9 1.0
O B:HOH2009 4.7 20.5 1.0
O B:HOH2269 4.8 32.7 1.0
N B:SER167 4.9 32.8 1.0

Zinc binding site 5 out of 8 in 1vj0

Go back to Zinc Binding Sites List in 1vj0
Zinc binding site 5 out of 8 in the Crystal Structure of Alcohol Dehydrogenase (TM0436) From Thermotoga Maritima at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of Alcohol Dehydrogenase (TM0436) From Thermotoga Maritima at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn400

b:22.1
occ:1.00
 SG C:CYS103 2.3 26.6 1.0
SG C:CYS115 2.3 27.1 1.0
SG C:CYS106 2.4 26.3 1.0
SG C:CYS100 2.4 27.4 1.0
CB C:CYS115 3.3 26.6 1.0
CB C:CYS103 3.4 26.0 1.0
CB C:CYS106 3.5 26.8 1.0
CB C:CYS100 3.6 30.2 1.0
N C:CYS100 3.6 30.1 1.0
N C:CYS103 3.9 27.2 1.0
CA C:CYS115 4.0 26.4 1.0
CA C:CYS100 4.0 29.6 1.0
N C:GLY101 4.0 28.2 1.0
CA C:CYS103 4.2 26.8 1.0
N C:CYS106 4.3 25.7 1.0
C C:CYS100 4.3 29.8 1.0
CA C:CYS106 4.4 24.5 1.0
N C:GLU102 4.5 29.7 1.0
CD C:PRO116 4.5 27.6 1.0
ND2 C:ASN117 4.5 29.5 1.0
CB C:THR99 4.5 30.5 1.0
C C:THR99 4.7 30.2 1.0
C C:CYS115 4.8 25.7 1.0
C C:CYS103 4.9 25.1 1.0
N C:PRO116 4.9 26.8 1.0
CA C:GLY101 4.9 29.6 1.0

Zinc binding site 6 out of 8 in 1vj0

Go back to Zinc Binding Sites List in 1vj0
Zinc binding site 6 out of 8 in the Crystal Structure of Alcohol Dehydrogenase (TM0436) From Thermotoga Maritima at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of Alcohol Dehydrogenase (TM0436) From Thermotoga Maritima at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn401

b:33.5
occ:0.41
 NE2 C:HIS65 2.2 28.9 1.0
SG C:CYS43 2.4 40.0 1.0
SG C:CYS166 2.4 40.2 0.7
OE2 C:GLU66 2.5 42.6 1.0
CB C:CYS43 2.9 35.0 1.0
CB C:CYS166 2.9 37.6 0.3
CB C:CYS166 3.0 38.0 0.7
CE1 C:HIS65 3.2 32.8 1.0
CD2 C:HIS65 3.2 31.1 1.0
SG C:CYS166 3.2 39.5 0.3
CD C:GLU66 3.5 32.0 1.0
OG C:SER45 3.8 36.7 1.0
CG C:GLU66 4.0 35.1 1.0
ND1 C:HIS65 4.3 29.7 1.0
CG C:HIS65 4.3 28.7 1.0
CA C:CYS43 4.4 34.0 1.0
CA C:CYS166 4.4 37.3 1.0
OE1 C:GLU66 4.5 39.4 1.0
O C:HOH2174 4.7 33.8 1.0
O C:HOH2022 4.8 19.6 1.0
N C:SER167 5.0 34.5 1.0
CB C:SER45 5.0 33.3 1.0

Zinc binding site 7 out of 8 in 1vj0

Go back to Zinc Binding Sites List in 1vj0
Zinc binding site 7 out of 8 in the Crystal Structure of Alcohol Dehydrogenase (TM0436) From Thermotoga Maritima at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Crystal Structure of Alcohol Dehydrogenase (TM0436) From Thermotoga Maritima at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn400

b:23.5
occ:1.00
 SG D:CYS103 2.3 26.4 1.0
SG D:CYS115 2.3 29.3 1.0
SG D:CYS100 2.4 29.7 1.0
SG D:CYS106 2.4 29.7 1.0
CB D:CYS115 3.3 28.7 1.0
CB D:CYS106 3.5 28.2 1.0
CB D:CYS103 3.5 27.1 1.0
N D:CYS100 3.5 30.8 1.0
CB D:CYS100 3.6 29.8 1.0
N D:CYS103 3.9 28.2 1.0
N D:GLY101 4.0 29.9 1.0
CA D:CYS115 4.0 28.3 1.0
CA D:CYS100 4.0 30.1 1.0
CA D:CYS103 4.2 27.3 1.0
N D:CYS106 4.3 27.9 1.0
ND2 D:ASN117 4.3 36.0 1.0
C D:CYS100 4.4 30.9 1.0
N D:GLU102 4.4 29.9 1.0
CA D:CYS106 4.4 28.5 1.0
CB D:THR99 4.5 29.6 1.0
CD D:PRO116 4.6 28.8 1.0
C D:THR99 4.6 30.3 1.0
C D:CYS115 4.8 28.3 1.0
C D:CYS103 4.9 26.8 1.0
CA D:GLY101 4.9 30.6 1.0
CA D:THR99 5.0 29.7 1.0
N D:PRO116 5.0 28.7 1.0
C D:GLU102 5.0 28.9 1.0

Zinc binding site 8 out of 8 in 1vj0

Go back to Zinc Binding Sites List in 1vj0
Zinc binding site 8 out of 8 in the Crystal Structure of Alcohol Dehydrogenase (TM0436) From Thermotoga Maritima at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Crystal Structure of Alcohol Dehydrogenase (TM0436) From Thermotoga Maritima at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn401

b:34.9
occ:0.33
 OE2 D:GLU66 2.2 40.9 1.0
NE2 D:HIS65 2.2 28.6 1.0
SG D:CYS43 2.3 41.5 1.0
SG D:CYS166 2.4 40.1 0.7
CB D:CYS166 2.8 37.1 0.3
CB D:CYS166 2.8 37.3 0.7
CD2 D:HIS65 3.0 31.8 1.0
SG D:CYS166 3.1 38.8 0.3
CB D:CYS43 3.2 37.1 1.0
CD D:GLU66 3.3 34.9 1.0
CE1 D:HIS65 3.3 30.0 1.0
CG D:GLU66 3.8 35.7 1.0
OG D:SER45 4.0 37.2 1.0
CG D:HIS65 4.2 30.3 1.0
OE1 D:GLU66 4.2 36.4 1.0
CA D:CYS166 4.3 37.0 1.0
ND1 D:HIS65 4.3 28.7 1.0
CA D:CYS43 4.4 36.5 1.0
O D:HOH2032 4.7 21.7 1.0
N D:SER167 4.8 32.9 1.0
O D:HOH2266 4.9 25.9 0.5
C D:CYS166 4.9 35.6 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Tue Aug 19 23:51:06 2025

Last articles

Fe in 9VR0
Fe in 9UD8
Fe in 9QDT
Fe in 9S2T
Fe in 9JQA
Fe in 9IYV
Fe in 9J47
Fe in 9JQM
Fe in 9J2L
Fe in 9J1Q
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy