Zinc in PDB 8yoz: Crystal Structure of the Small Zinc-Finger Protein Zifs (TTHA0897) From Thermus Thermophilus HB8.

The structure of Crystal Structure of the Small Zinc-Finger Protein Zifs (TTHA0897) From Thermus Thermophilus HB8., PDB code: 8yoz was solved by S.Kurinami, K.Fukui, T.Murakawa, S.Baba, T.Kumasaka, H.Okanishi, Y.Kanai, T.Yano, R.Masui, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.96 / 1.83
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	30.12, 67.01, 81.92, 90, 90, 90
R / Rfree (%)	23.3 / 26.4

The binding sites of Zinc atom in the Crystal Structure of the Small Zinc-Finger Protein Zifs (TTHA0897) From Thermus Thermophilus HB8. (pdb code 8yoz). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the Small Zinc-Finger Protein Zifs (TTHA0897) From Thermus Thermophilus HB8., PDB code: 8yoz:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of the Small Zinc-Finger Protein Zifs (TTHA0897) From Thermus Thermophilus HB8.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Small Zinc-Finger Protein Zifs (TTHA0897) From Thermus Thermophilus HB8. within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn101 b:45.4 occ:1.00 SG A:CYS29 2.2 43.0 1.0 SG A:CYS26 2.2 42.5 1.0 SG A:CYS9 2.3 53.3 1.0 SG A:CYS6 2.3 39.9 1.0 CB A:CYS26 3.1 45.4 1.0 CB A:CYS29 3.2 41.6 1.0 CB A:CYS9 3.4 57.2 1.0 CB A:CYS6 3.6 42.9 1.0 N A:CYS29 3.7 48.6 1.0 N A:CYS9 3.8 53.0 1.0 CB A:ASN8 3.9 51.7 1.0 CA A:CYS29 4.0 44.1 1.0 CA A:CYS9 4.2 55.7 1.0 CA A:CYS26 4.5 37.6 1.0 CB A:GLN28 4.6 47.8 1.0 CH2 B:TRP33 4.6 36.9 1.0 C A:CYS29 4.7 49.7 1.0 ND2 A:ASN8 4.7 40.6 1.0 N A:GLY30 4.7 44.0 1.0 C A:ASN8 4.8 55.9 1.0 CA A:ASN8 4.8 54.8 1.0 C A:GLN28 4.8 51.9 1.0 CZ2 B:TRP33 4.9 40.5 1.0 CG A:ASN8 4.9 46.3 1.0 N A:ASN8 4.9 52.8 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of the Small Zinc-Finger Protein Zifs (TTHA0897) From Thermus Thermophilus HB8.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Small Zinc-Finger Protein Zifs (TTHA0897) From Thermus Thermophilus HB8. within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn101 b:38.1 occ:1.00 SG B:CYS29 2.2 38.1 1.0 SG B:CYS26 2.3 34.0 1.0 SG B:CYS9 2.3 42.7 1.0 SG B:CYS6 2.5 38.2 1.0 CB B:CYS26 3.1 32.1 1.0 CB B:CYS9 3.2 40.2 1.0 CB B:CYS29 3.2 42.0 1.0 CB B:CYS6 3.5 35.4 1.0 N B:CYS29 3.7 40.8 1.0 N B:CYS9 3.8 47.3 1.0 CA B:CYS29 4.0 35.1 1.0 CA B:CYS9 4.1 44.9 1.0 CB B:ASN8 4.2 44.0 1.0 O B:HOH223 4.4 51.1 1.0 CA B:CYS26 4.6 31.9 1.0 C B:GLN28 4.7 44.9 1.0 CB B:GLN28 4.7 44.3 1.0 C B:CYS29 4.7 39.8 1.0 C B:ASN8 4.7 50.2 1.0 N B:GLY30 4.8 37.8 1.0 CG2 B:VAL11 4.9 47.5 1.0 CA B:ASN8 4.9 43.1 1.0 CA B:CYS6 4.9 36.4 1.0 N B:ASN8 4.9 43.2 1.0 CH2 A:TRP33 5.0 32.7 1.0

S.Kurinami, K.Fukui, T.Murakawa, S.Baba, T.Kumasaka, H.Okanishi, Y.Kanai, T.Yano, R.Masui. Crystal Structure of the Small Zinc-Finger Protein Zifs (TTHA0897) From Thermus Thermophilus HB8. To Be Published.