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Zinc in PDB 9vxg: Ros-Sensing Transcription Factor Ychj Regulates the Rssb-Rpos Pathway to Protect Salmonella Against Oxidative Attack By Macrophages

Protein crystallography data

The structure of Ros-Sensing Transcription Factor Ychj Regulates the Rssb-Rpos Pathway to Protect Salmonella Against Oxidative Attack By Macrophages, PDB code: 9vxg was solved by X.L.Yuan, W.W.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.47 / 2.30
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 58.937, 58.937, 124.367, 90, 90, 90
R / Rfree (%) 23.2 / 26.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Ros-Sensing Transcription Factor Ychj Regulates the Rssb-Rpos Pathway to Protect Salmonella Against Oxidative Attack By Macrophages (pdb code 9vxg). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Ros-Sensing Transcription Factor Ychj Regulates the Rssb-Rpos Pathway to Protect Salmonella Against Oxidative Attack By Macrophages, PDB code: 9vxg:

Zinc binding site 1 out of 1 in 9vxg

Go back to Zinc Binding Sites List in 9vxg
Zinc binding site 1 out of 1 in the Ros-Sensing Transcription Factor Ychj Regulates the Rssb-Rpos Pathway to Protect Salmonella Against Oxidative Attack By Macrophages


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Ros-Sensing Transcription Factor Ychj Regulates the Rssb-Rpos Pathway to Protect Salmonella Against Oxidative Attack By Macrophages within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:49.1
occ:1.00
SG A:CYS17 1.6 45.2 1.0
SG A:CYS7 2.0 47.8 1.0
SG A:CYS16 2.2 49.0 1.0
SG A:CYS5 2.3 71.3 1.0
CB A:CYS7 3.1 50.5 1.0
CB A:CYS17 3.1 48.6 1.0
N A:CYS17 3.3 55.4 1.0
CB A:CYS5 3.3 42.5 1.0
CB A:CYS16 3.3 54.1 1.0
CA A:CYS17 3.8 55.1 1.0
OG A:SER9 4.0 49.1 1.0
N A:CYS7 4.2 49.1 1.0
C A:CYS16 4.2 50.2 1.0
SG A:CYS39 4.2 61.2 1.0
CA A:CYS7 4.2 48.6 1.0
CA A:CYS16 4.4 51.3 1.0
CB A:SER9 4.5 43.8 1.0
CB A:ARG35 4.7 45.7 1.0
CA A:CYS5 4.7 50.5 1.0
CD A:ARG35 4.8 47.6 1.0
C A:CYS5 4.9 46.3 1.0

Reference:

W.W.Wang, X.L.Yuan. Ros-Sensing Transcription Factor Ychj Regulates the Rssb-Rpos Pathway to Protect Salmonella Against Oxidative Attack By Macrophages To Be Published.
Page generated: Fri Aug 22 19:01:10 2025

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