Zinc in PDB 8h1j: Cryo-Em Structure of the Tnpb-Omegarna-Target Dna Ternary Complex

The binding sites of Zinc atom in the Cryo-Em Structure of the Tnpb-Omegarna-Target Dna Ternary Complex (pdb code 8h1j). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure of the Tnpb-Omegarna-Target Dna Ternary Complex, PDB code: 8h1j:

Zinc binding site 1 out of 1 in the Cryo-Em Structure of the Tnpb-Omegarna-Target Dna Ternary Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of the Tnpb-Omegarna-Target Dna Ternary Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn501 b:277.6 occ:1.00 CB A:CYS331 2.1 193.7 1.0 SG A:CYS331 2.2 192.3 1.0 SG A:CYS351 2.3 222.4 1.0 SG A:CYS354 2.3 225.0 1.0 SG A:CYS334 2.3 215.4 1.0 CB A:CYS351 2.8 218.8 1.0 CB A:CYS354 3.2 220.2 1.0 CA A:CYS331 3.6 190.8 1.0 CB A:CYS334 3.8 213.2 1.0 N A:CYS354 4.1 220.9 1.0 CE1 A:HIS358 4.2 192.5 1.0 N A:CYS334 4.2 214.4 1.0 N A:CYS331 4.3 190.1 1.0 CA A:CYS354 4.3 220.1 1.0 C A:CYS331 4.3 191.1 1.0 CA A:CYS351 4.3 217.8 1.0 CB A:PHE336 4.5 210.5 1.0 NE2 A:HIS358 4.5 190.5 1.0 N A:PHE336 4.5 212.3 1.0 CA A:CYS334 4.5 213.6 1.0 N A:GLY335 4.6 211.4 1.0 O A:CYS331 4.6 191.2 1.0 CH2 A:TRP349 4.9 200.7 1.0 O A:PHE336 4.9 210.2 1.0 C A:CYS334 4.9 212.9 1.0 C A:CYS351 5.0 217.1 1.0

R.Nakagawa, H.Hisato, O.Satoshi, N.Suchita, K.Soumya, A.T.Han, Y.W.Wen, S.Yutaro, T.Tatsuki, S.Fumiya, K.Tsukasa, K.Yoshiaki, I.Yuzuru, V.D.O.John, Z.Feng, O.Nureki. Cryo-Em Structure of the Transposon-Associated Tnpb Enzyme Nature 2023.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-023-05933-9