Atomistry » Zinc » PDB 5cdt-5cvm » 5cm2
Atomistry »
  Zinc »
    PDB 5cdt-5cvm »
      5cm2 »

Zinc in PDB 5cm2: Insights Into Molecular Plasticity in Protein Complexes From TRM9- TRM112 Trna Modifying Enzyme Crystal Structure

Protein crystallography data

The structure of Insights Into Molecular Plasticity in Protein Complexes From TRM9- TRM112 Trna Modifying Enzyme Crystal Structure, PDB code: 5cm2 was solved by J.Letoquart, N.Van Tran, V.Caroline, A.Aleksandrov, N.Lazar, H.Vantilbeurgh, D.Liger, M.Graille, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.05 / 2.50
Space group I 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 176.200, 176.200, 176.200, 90.00, 90.00, 90.00
R / Rfree (%) 19.9 / 24.2

Zinc Binding Sites:

The binding sites of Zinc atom in the Insights Into Molecular Plasticity in Protein Complexes From TRM9- TRM112 Trna Modifying Enzyme Crystal Structure (pdb code 5cm2). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Insights Into Molecular Plasticity in Protein Complexes From TRM9- TRM112 Trna Modifying Enzyme Crystal Structure, PDB code: 5cm2:

Zinc binding site 1 out of 1 in 5cm2

Go back to Zinc Binding Sites List in 5cm2
Zinc binding site 1 out of 1 in the Insights Into Molecular Plasticity in Protein Complexes From TRM9- TRM112 Trna Modifying Enzyme Crystal Structure


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Insights Into Molecular Plasticity in Protein Complexes From TRM9- TRM112 Trna Modifying Enzyme Crystal Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Zn201

b:76.6
occ:1.00
SG M:CYS16 2.2 65.5 1.0
SG M:CYS106 2.4 74.0 1.0
SG M:CYS11 2.6 81.0 1.0
SG M:CYS109 2.7 84.5 1.0
CB M:CYS16 3.1 76.0 1.0
CB M:CYS109 3.1 79.0 1.0
CB M:CYS106 3.3 68.3 1.0
CB M:CYS11 3.5 77.7 1.0
N M:CYS109 3.7 81.6 1.0
CB M:SER13 4.0 76.2 1.0
CA M:CYS109 4.0 79.1 1.0
ND2 M:ASN108 4.5 79.3 1.0
CA M:CYS16 4.5 77.0 1.0
CB M:ASN108 4.6 75.5 1.0
C M:ASN108 4.6 84.6 1.0
CA M:CYS106 4.7 70.7 1.0
OG M:SER13 4.7 80.0 1.0
N M:ASN108 4.9 81.0 1.0
N M:CYS16 4.9 72.2 1.0
CA M:CYS11 5.0 67.2 1.0
CA M:ASN108 5.0 81.9 1.0
OH M:TYR113 5.0 65.0 1.0

Reference:

J.Letoquart, N.Van Tran, V.Caroline, A.Aleksandrov, N.Lazar, H.Van Tilbeurgh, D.Liger, M.Graille. Insights Into Molecular Plasticity in Protein Complexes From TRM9-TRM112 Trna Modifying Enzyme Crystal Structure. Nucleic Acids Res. V. 43 10989 2015.
ISSN: ESSN 1362-4962
PubMed: 26438534
DOI: 10.1093/NAR/GKV1009
Page generated: Sun Oct 27 14:23:57 2024

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy