Zinc in PDB 5r67: Pandda Analysis Group Deposition -- Crystal Structure of Human Cleavage Factor Im in Complex with FMOPL000589A

The structure of Pandda Analysis Group Deposition -- Crystal Structure of Human Cleavage Factor Im in Complex with FMOPL000589A, PDB code: 5r67 was solved by R.Talon, T.Krojer, L.Diaz-Saez, A.R.Bradley, A.Aimon, M.Fairhead, C.H.Arrowsmith, C.Bountra, A.M.Edwards, K.V.M.Huber, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.65 / 1.52
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	59.770, 59.770, 214.230, 90.00, 90.00, 120.00
R / Rfree (%)	20.9 / 24.5

The binding sites of Zinc atom in the Pandda Analysis Group Deposition -- Crystal Structure of Human Cleavage Factor Im in Complex with FMOPL000589A (pdb code 5r67). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the Pandda Analysis Group Deposition -- Crystal Structure of Human Cleavage Factor Im in Complex with FMOPL000589A, PDB code: 5r67:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in the Pandda Analysis Group Deposition -- Crystal Structure of Human Cleavage Factor Im in Complex with FMOPL000589A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Pandda Analysis Group Deposition -- Crystal Structure of Human Cleavage Factor Im in Complex with FMOPL000589A within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:47.7 occ:1.00 O A:HOH528 2.3 46.7 1.0 O A:HOH524 2.4 33.7 1.0 ND1 A:HIS171 2.5 36.1 1.0 CE A:MET76 2.6 41.0 1.0 SD A:MET76 3.3 37.6 1.0 CG A:HIS171 3.3 24.1 1.0 CB A:HIS171 3.5 19.5 1.0 CE1 A:HIS171 3.5 39.1 1.0 NE1 A:TRP149 4.0 31.8 1.0 O A:HOH522 4.2 54.0 1.0 CD2 A:HIS171 4.4 20.8 1.0 NE2 A:HIS171 4.6 31.8 1.0 CD1 A:TRP149 4.7 24.8 1.0 CA A:HIS171 4.9 20.2 1.0 CG A:MET76 5.0 33.2 1.0

Zinc binding site 2 out of 6 in the Pandda Analysis Group Deposition -- Crystal Structure of Human Cleavage Factor Im in Complex with FMOPL000589A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Pandda Analysis Group Deposition -- Crystal Structure of Human Cleavage Factor Im in Complex with FMOPL000589A within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn302 b:0.8 occ:1.00 ND1 A:HIS89 2.3 28.6 1.0 CG A:HIS89 3.2 28.4 1.0 CE1 A:HIS89 3.3 30.8 1.0 CB A:HIS89 3.5 30.2 1.0 CA A:HIS89 3.7 27.8 1.0 NE2 A:HIS89 4.3 25.3 1.0 CD2 A:HIS89 4.4 27.1 1.0 N A:HIS89 4.6 26.6 1.0 C A:HIS89 4.7 30.4 1.0 O A:HOH496 4.9 41.3 1.0

Zinc binding site 3 out of 6 in the Pandda Analysis Group Deposition -- Crystal Structure of Human Cleavage Factor Im in Complex with FMOPL000589A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Pandda Analysis Group Deposition -- Crystal Structure of Human Cleavage Factor Im in Complex with FMOPL000589A within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn301 b:27.8 occ:1.00 O B:HOH401 1.1 17.7 1.0 OE1 B:GLU88 2.0 27.1 0.3 NE2 B:HIS93 2.1 20.8 1.0 CE1 B:HIS93 2.9 23.3 1.0 CD B:GLU88 2.9 35.1 0.3 CD2 B:HIS93 3.2 23.7 1.0 CG B:GLU88 3.2 33.6 0.3 OE2 B:GLU88 4.1 34.8 0.3 ND1 B:HIS93 4.1 20.8 1.0 CG B:HIS93 4.2 20.6 1.0 NE2 B:HIS89 4.4 37.8 0.3 CB B:GLU88 4.4 33.4 0.2 CG B:GLU88 4.4 38.2 0.2 CG B:PRO197 4.5 23.2 1.0 CB B:PRO197 4.5 24.6 1.0 O B:GLU88 4.6 35.3 0.3 CB B:GLU88 4.7 32.4 0.3 CD2 B:HIS89 4.8 39.0 0.3 CD B:PRO197 4.8 23.6 1.0 CE1 B:HIS89 4.9 21.4 0.3 O B:HOH461 5.0 50.2 1.0

Zinc binding site 4 out of 6 in the Pandda Analysis Group Deposition -- Crystal Structure of Human Cleavage Factor Im in Complex with FMOPL000589A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Pandda Analysis Group Deposition -- Crystal Structure of Human Cleavage Factor Im in Complex with FMOPL000589A within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn302 b:31.9 occ:1.00 NE2 B:HIS164 1.8 27.6 1.0 O B:HOH497 2.3 30.4 1.0 CE1 B:HIS164 2.7 29.9 1.0 CD2 B:HIS164 2.9 29.0 1.0 ND1 B:HIS164 3.8 27.5 1.0 CG B:HIS164 4.0 27.5 1.0 CB B:ALA163 4.9 32.5 1.0

Zinc binding site 5 out of 6 in the Pandda Analysis Group Deposition -- Crystal Structure of Human Cleavage Factor Im in Complex with FMOPL000589A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Pandda Analysis Group Deposition -- Crystal Structure of Human Cleavage Factor Im in Complex with FMOPL000589A within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn303 b:73.7 occ:1.00 ND1 B:HIS164 2.4 27.5 1.0 CG B:HIS164 3.2 27.5 1.0 CB B:HIS164 3.4 28.1 1.0 CE1 B:HIS164 3.5 29.9 1.0 CA B:HIS164 4.2 28.9 1.0 CD2 B:HIS164 4.4 29.0 1.0 NE2 B:HIS164 4.6 27.6 1.0 O B:HIS164 4.8 35.5 1.0

Zinc binding site 6 out of 6 in the Pandda Analysis Group Deposition -- Crystal Structure of Human Cleavage Factor Im in Complex with FMOPL000589A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Pandda Analysis Group Deposition -- Crystal Structure of Human Cleavage Factor Im in Complex with FMOPL000589A within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn304 b:0.2 occ:1.00 ND1 B:HIS171 2.5 32.2 1.0 CG B:HIS171 3.2 29.8 1.0 CE B:MET76 3.3 43.8 1.0 CE1 B:HIS171 3.3 34.5 1.0 O B:HOH480 3.4 37.4 1.0 CB B:HIS171 3.5 26.2 1.0 NE1 B:TRP149 3.7 34.0 1.0 SD B:MET76 3.8 46.6 1.0 CD2 B:HIS171 4.2 28.4 1.0 NE2 B:HIS171 4.2 32.3 1.0 CD1 B:TRP149 4.4 32.3 1.0 CE2 B:TRP149 4.7 31.7 1.0 CA B:HIS171 5.0 24.6 1.0

R.Talon, T.Krojer, L.Diaz-Saez, A.R.Bradley, A.Aimon, M.Fairhead, C.H.Arrowsmith, C.Bountra, A.M.Edwards, K.V.M.Huber, F.Von Delft. Pandda Analysis Group Deposition To Be Published.