Zinc in PDB 4jiu: Crystal Structure of the Metallopeptidase Zymogen of Pyrococcus Abyssi Abylysin

The structure of Crystal Structure of the Metallopeptidase Zymogen of Pyrococcus Abyssi Abylysin, PDB code: 4jiu was solved by M.Lopez-Pelegrin, N.Cerda-Costa, F.Martinez-Jimenez, A.Cintas-Pedrola, A.Canals, J.R.Peinado, M.A.Marti-Renom, C.Lopez-Otin, J.L.Arolas, F.X.Gomis-Ruth, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.70 / 1.15
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	34.620, 44.660, 72.000, 90.00, 90.00, 90.00
R / Rfree (%)	14.7 / 19.2

The binding sites of Zinc atom in the Crystal Structure of the Metallopeptidase Zymogen of Pyrococcus Abyssi Abylysin (pdb code 4jiu). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the Metallopeptidase Zymogen of Pyrococcus Abyssi Abylysin, PDB code: 4jiu:

Zinc binding site 1 out of 1 in the Crystal Structure of the Metallopeptidase Zymogen of Pyrococcus Abyssi Abylysin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Metallopeptidase Zymogen of Pyrococcus Abyssi Abylysin within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:10.2 occ:0.96 NE2 A:HIS60 2.0 10.8 1.0 NE2 A:HIS64 2.0 9.8 1.0 O A:VAL105 2.0 12.3 1.0 NE2 A:HIS72 2.0 11.1 1.0 OXT A:VAL105 2.7 14.5 1.0 C A:VAL105 2.7 12.3 1.0 CE1 A:HIS64 2.9 9.8 1.0 CD2 A:HIS60 3.0 9.4 1.0 CE1 A:HIS60 3.0 10.8 1.0 CE1 A:HIS72 3.0 13.8 1.0 CD2 A:HIS72 3.0 11.2 1.0 CD2 A:HIS64 3.1 9.4 1.0 O A:HOH375 3.6 93.3 1.0 O A:HOH305 3.9 17.5 1.0 ND1 A:HIS60 4.1 10.2 1.0 ND1 A:HIS64 4.1 9.9 1.0 CG A:HIS60 4.1 9.0 1.0 ND1 A:HIS72 4.2 13.8 1.0 CG A:HIS64 4.2 9.3 1.0 CG A:HIS72 4.2 10.6 1.0 CA A:VAL105 4.2 12.8 1.0 CZ A:PHE76 4.3 10.6 1.0 O A:HOH308 4.3 14.0 1.0 CE1 A:PHE76 4.6 11.1 1.0 CG A:MET104 4.7 23.5 0.4 O A:HOH307 4.7 22.6 1.0 O A:HOH309 4.8 16.7 1.0 O A:MET104 4.9 25.0 1.0 OE2 A:GLU61 4.9 13.5 1.0 O A:HOH310 4.9 30.3 1.0 CG1 A:VAL105 5.0 14.7 1.0 CE2 A:PHE76 5.0 10.8 1.0 N A:VAL105 5.0 13.2 1.0 CG A:MET104 5.0 19.2 0.6

M.Lopez-Pelegrin, N.Cerda-Costa, F.Martinez-Jimenez, A.Cintas-Pedrola, A.Canals, J.R.Peinado, M.A.Marti-Renom, C.Lopez-Otin, J.L.Arolas, F.X.Gomis-Ruth. A Novel Family of Soluble Minimal Scaffolds Provides Structural Insight Into the Catalytic Domains of Integral Membrane Metallopeptidases J.Biol.Chem. V. 288 21279 2013.
ISSN: ISSN 0021-9258
PubMed: 23733187
DOI: 10.1074/JBC.M113.476580