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Zinc in PDB 5b6b: Complex of LATS1 and Phosphomimetic MOB1B

Enzymatic activity of Complex of LATS1 and Phosphomimetic MOB1B

All present enzymatic activity of Complex of LATS1 and Phosphomimetic MOB1B:
2.7.11.1;

Protein crystallography data

The structure of Complex of LATS1 and Phosphomimetic MOB1B, PDB code: 5b6b was solved by S.-Y.Kim, Y.Tachioka, T.Mori, T.Hakoshima, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.64 / 3.54
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 168.646, 301.437, 127.379, 90.00, 90.00, 90.00
R / Rfree (%) 22.2 / 26.6

Other elements in 5b6b:

The structure of Complex of LATS1 and Phosphomimetic MOB1B also contains other interesting chemical elements:

Chlorine (Cl) 7 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Complex of LATS1 and Phosphomimetic MOB1B (pdb code 5b6b). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 8 binding sites of Zinc where determined in the Complex of LATS1 and Phosphomimetic MOB1B, PDB code: 5b6b:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Zinc binding site 1 out of 8 in 5b6b

Go back to Zinc Binding Sites List in 5b6b
Zinc binding site 1 out of 8 in the Complex of LATS1 and Phosphomimetic MOB1B


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Complex of LATS1 and Phosphomimetic MOB1B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn302

b:0.8
occ:1.00
 NE2 A:HIS161 2.0 68.6 1.0
NE2 A:HIS166 2.0 35.1 1.0
SG A:CYS79 2.3 47.1 1.0
SG A:CYS84 2.3 68.0 1.0
CB A:ALA111 2.3 99.5 1.0
CE1 A:HIS161 2.4 69.6 1.0
CE1 A:HIS166 2.7 42.3 1.0
CB A:CYS84 2.7 98.3 1.0
CD2 A:HIS166 3.3 58.4 1.0
CD2 A:HIS161 3.3 64.1 1.0
ND1 A:HIS161 3.7 49.1 1.0
CB A:CYS79 3.8 61.1 1.0
CA A:ALA111 3.9 56.5 1.0
ND1 A:HIS166 3.9 52.5 1.0
CG A:HIS161 4.1 37.7 1.0
CA A:CYS84 4.2 79.0 1.0
CG A:HIS166 4.2 42.0 1.0
CA A:CYS79 4.3 63.3 1.0
N A:ALA111 4.6 54.3 1.0
C A:ALA111 4.7 55.1 1.0
N A:CYS84 4.8 59.3 1.0
CB A:GLN165 4.8 58.5 1.0
C A:CYS79 4.9 52.1 1.0
O A:CYS84 4.9 72.1 1.0
N A:PRO112 5.0 50.9 1.0

Zinc binding site 2 out of 8 in 5b6b

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Zinc binding site 2 out of 8 in the Complex of LATS1 and Phosphomimetic MOB1B


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Complex of LATS1 and Phosphomimetic MOB1B within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn302

b:92.0
occ:1.00
 NE2 B:HIS161 2.0 74.5 1.0
NE2 B:HIS166 2.0 60.8 1.0
SG B:CYS84 2.3 0.8 1.0
CB B:ALA111 2.3 0.9 1.0
SG B:CYS79 2.3 74.6 1.0
CE1 B:HIS161 2.7 86.4 1.0
CE1 B:HIS166 2.7 77.0 1.0
CB B:CYS84 2.9 0.6 1.0
CD2 B:HIS166 3.2 70.0 1.0
CD2 B:HIS161 3.3 80.2 1.0
CB B:CYS79 3.8 87.6 1.0
CA B:ALA111 3.9 81.0 1.0
ND1 B:HIS161 3.9 99.7 1.0
ND1 B:HIS166 4.0 71.8 1.0
CG B:HIS161 4.2 75.3 1.0
CA B:CYS79 4.2 77.9 1.0
CG B:HIS166 4.2 63.4 1.0
CA B:CYS84 4.3 99.6 1.0
C B:ALA111 4.5 70.1 1.0
N B:ALA111 4.7 0.7 1.0
C B:CYS79 4.8 87.7 1.0
CB B:GLN165 4.8 83.5 1.0
N B:PRO112 4.8 61.3 1.0
N B:CYS84 4.8 96.1 1.0
CD B:PRO112 4.9 63.3 1.0

Zinc binding site 3 out of 8 in 5b6b

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Zinc binding site 3 out of 8 in the Complex of LATS1 and Phosphomimetic MOB1B


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Complex of LATS1 and Phosphomimetic MOB1B within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn302

b:0.4
occ:1.00
 NE2 D:HIS161 2.0 71.7 1.0
NE2 D:HIS166 2.0 65.0 1.0
SG D:CYS84 2.3 0.3 1.0
CB D:ALA111 2.3 0.8 1.0
SG D:CYS79 2.3 60.3 1.0
CE1 D:HIS161 2.6 78.6 1.0
CE1 D:HIS166 2.8 79.0 1.0
CB D:CYS84 2.8 0.1 1.0
CD2 D:HIS166 3.2 78.6 1.0
CD2 D:HIS161 3.3 90.8 1.0
CB D:CYS79 3.8 93.3 1.0
CA D:ALA111 3.8 95.2 1.0
ND1 D:HIS161 3.9 89.0 1.0
ND1 D:HIS166 4.0 78.5 1.0
CG D:HIS161 4.2 89.3 1.0
CG D:HIS166 4.2 73.9 1.0
CA D:CYS79 4.3 96.8 1.0
CA D:CYS84 4.3 0.2 1.0
C D:ALA111 4.6 87.4 1.0
N D:ALA111 4.7 0.3 1.0
CB D:GLN165 4.7 0.2 1.0
N D:CYS84 4.8 0.1 1.0
N D:PRO112 4.8 75.5 1.0
C D:CYS79 4.8 0.1 1.0
CD D:PRO112 4.9 98.6 1.0

Zinc binding site 4 out of 8 in 5b6b

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Zinc binding site 4 out of 8 in the Complex of LATS1 and Phosphomimetic MOB1B


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Complex of LATS1 and Phosphomimetic MOB1B within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Zn302

b:69.8
occ:1.00
 NE2 F:HIS161 2.0 72.4 1.0
NE2 F:HIS166 2.0 20.9 1.0
SG F:CYS84 2.3 67.5 1.0
CB F:ALA111 2.3 89.9 1.0
SG F:CYS79 2.3 74.5 1.0
CE1 F:HIS161 2.6 79.2 1.0
CE1 F:HIS166 2.8 58.9 1.0
CB F:CYS84 2.8 80.8 1.0
CD2 F:HIS166 3.2 54.6 1.0
CD2 F:HIS161 3.3 77.5 1.0
CB F:CYS79 3.7 83.3 1.0
ND1 F:HIS161 3.8 59.9 1.0
CA F:ALA111 3.9 53.0 1.0
ND1 F:HIS166 4.0 59.0 1.0
CA F:CYS79 4.1 60.0 1.0
CG F:HIS161 4.2 60.5 1.0
CG F:HIS166 4.2 47.0 1.0
CA F:CYS84 4.3 73.3 1.0
C F:ALA111 4.6 55.0 1.0
C F:CYS79 4.7 63.7 1.0
N F:ALA111 4.7 53.9 1.0
N F:CYS84 4.8 74.5 1.0
CB F:GLN165 4.9 86.5 1.0
N F:PRO112 4.9 51.8 1.0
CD F:PRO112 4.9 49.0 1.0
O F:CYS84 5.0 44.6 1.0

Zinc binding site 5 out of 8 in 5b6b

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Zinc binding site 5 out of 8 in the Complex of LATS1 and Phosphomimetic MOB1B


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Complex of LATS1 and Phosphomimetic MOB1B within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Zn302

b:0.1
occ:1.00
 NE2 H:HIS161 2.0 0.7 1.0
NE2 H:HIS166 2.0 60.9 1.0
SG H:CYS84 2.3 0.6 1.0
CB H:ALA111 2.3 0.6 1.0
SG H:CYS79 2.3 85.5 1.0
CE1 H:HIS161 2.6 0.4 1.0
CB H:CYS84 2.8 0.5 1.0
CE1 H:HIS166 2.8 68.2 1.0
CD2 H:HIS166 3.2 76.3 1.0
CD2 H:HIS161 3.3 0.1 1.0
CB H:CYS79 3.7 99.3 1.0
ND1 H:HIS161 3.8 99.0 1.0
CA H:ALA111 3.8 0.8 1.0
ND1 H:HIS166 4.0 52.6 1.0
CG H:HIS161 4.2 97.0 1.0
CG H:HIS166 4.2 63.5 1.0
CA H:CYS79 4.3 84.4 1.0
CA H:CYS84 4.3 0.6 1.0
C H:ALA111 4.6 0.2 1.0
N H:ALA111 4.7 0.7 1.0
CB H:GLN165 4.8 94.0 1.0
N H:CYS84 4.9 0.9 1.0
N H:PRO112 4.9 79.3 1.0
C H:CYS79 4.9 0.8 1.0
CD H:PRO112 4.9 0.6 1.0

Zinc binding site 6 out of 8 in 5b6b

Go back to Zinc Binding Sites List in 5b6b
Zinc binding site 6 out of 8 in the Complex of LATS1 and Phosphomimetic MOB1B


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Complex of LATS1 and Phosphomimetic MOB1B within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Zn302

b:0.8
occ:1.00
 NE2 K:HIS161 2.0 81.9 1.0
NE2 K:HIS166 2.0 29.7 1.0
SG K:CYS79 2.3 70.6 1.0
CB K:ALA111 2.3 0.7 1.0
SG K:CYS84 2.3 73.0 1.0
CE1 K:HIS161 2.6 78.5 1.0
CE1 K:HIS166 2.7 54.8 1.0
CB K:CYS84 2.8 0.4 1.0
CD2 K:HIS166 3.3 61.9 1.0
CD2 K:HIS161 3.3 83.5 1.0
CB K:CYS79 3.7 87.7 1.0
ND1 K:HIS161 3.8 73.4 1.0
CA K:ALA111 3.8 69.8 1.0
ND1 K:HIS166 3.9 66.9 1.0
CA K:CYS79 4.2 72.6 1.0
CG K:HIS161 4.2 75.0 1.0
CG K:HIS166 4.2 55.1 1.0
CA K:CYS84 4.3 88.8 1.0
C K:ALA111 4.6 58.8 1.0
N K:ALA111 4.6 73.8 1.0
C K:CYS79 4.8 78.1 1.0
N K:CYS84 4.8 68.3 1.0
CD K:PRO112 4.8 71.9 1.0
N K:PRO112 4.8 68.9 1.0
CB K:GLN165 5.0 68.4 1.0
OG K:SER83 5.0 0.8 1.0

Zinc binding site 7 out of 8 in 5b6b

Go back to Zinc Binding Sites List in 5b6b
Zinc binding site 7 out of 8 in the Complex of LATS1 and Phosphomimetic MOB1B


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Complex of LATS1 and Phosphomimetic MOB1B within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Zn302

b:0.2
occ:1.00
 NE2 M:HIS161 2.0 0.6 1.0
NE2 M:HIS166 2.0 0.6 1.0
SG M:CYS84 2.3 0.7 1.0
CB M:ALA111 2.3 0.6 1.0
SG M:CYS79 2.4 0.8 1.0
CE1 M:HIS161 2.6 0.2 1.0
CE1 M:HIS166 2.8 0.3 1.0
CB M:CYS84 2.8 0.6 1.0
CD2 M:HIS166 3.2 0.6 1.0
CD2 M:HIS161 3.3 0.9 1.0
ND1 M:HIS161 3.8 0.3 1.0
CB M:CYS79 3.8 0.8 1.0
CA M:ALA111 3.9 0.1 1.0
ND1 M:HIS166 4.0 0.2 1.0
CG M:HIS161 4.2 0.5 1.0
CG M:HIS166 4.2 0.1 1.0
CA M:CYS84 4.3 0.1 1.0
CA M:CYS79 4.4 0.1 1.0
C M:ALA111 4.6 0.7 1.0
N M:ALA111 4.7 0.4 1.0
CB M:GLN165 4.7 0.9 1.0
N M:CYS84 4.9 0.2 1.0
N M:PRO112 4.9 0.4 1.0
CD M:PRO112 4.9 0.6 1.0
C M:CYS79 5.0 0.5 1.0

Zinc binding site 8 out of 8 in 5b6b

Go back to Zinc Binding Sites List in 5b6b
Zinc binding site 8 out of 8 in the Complex of LATS1 and Phosphomimetic MOB1B


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Complex of LATS1 and Phosphomimetic MOB1B within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Zn301

b:0.7
occ:1.00
 NE2 O:HIS161 2.0 0.5 1.0
NE2 O:HIS166 2.1 0.7 1.0
CB O:ALA111 2.3 0.0 1.0
SG O:CYS79 2.3 0.9 1.0
SG O:CYS84 2.3 0.4 1.0
CE1 O:HIS161 2.5 0.5 1.0
CB O:CYS84 2.8 0.8 1.0
CE1 O:HIS166 2.9 0.2 1.0
CD2 O:HIS166 3.2 0.6 1.0
CD2 O:HIS161 3.3 0.2 1.0
CA O:ALA111 3.8 0.1 1.0
ND1 O:HIS161 3.8 0.8 1.0
CB O:CYS79 3.8 0.3 1.0
ND1 O:HIS166 4.1 0.7 1.0
CG O:HIS161 4.2 0.6 1.0
CG O:HIS166 4.3 0.9 1.0
CA O:CYS84 4.3 0.1 1.0
CA O:CYS79 4.4 0.9 1.0
C O:ALA111 4.5 0.2 1.0
N O:ALA111 4.6 0.2 1.0
CB O:GLN165 4.7 0.8 1.0
N O:PRO112 4.8 0.0 1.0
CD O:PRO112 4.8 0.6 1.0
N O:CYS84 4.8 0.4 1.0
C O:CYS79 5.0 0.7 1.0

Reference:

S.Y.Kim, Y.Tachioka, T.Mori, T.Hakoshima. Structural Basis For Autoinhibition and Its Relief of MOB1 in the Hippo Pathway Sci Rep V. 6 28488 2016.
ISSN: ESSN 2045-2322
PubMed: 27335147
DOI: 10.1038/SREP28488
Page generated: Sun Oct 27 13:24:29 2024

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