Zinc in PDB 3m4w: Structural Basis For the Negative Regulation of Bacterial Stress Response By Rseb

The structure of Structural Basis For the Negative Regulation of Bacterial Stress Response By Rseb, PDB code: 3m4w was solved by D.Y.Kim, E.Kwon, J.K.Choi, H.-Y.Hwang, K.K.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.98 / 2.30
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	87.097, 119.513, 150.866, 90.00, 90.00, 90.00
R / Rfree (%)	23.9 / 27.2

The binding sites of Zinc atom in the Structural Basis For the Negative Regulation of Bacterial Stress Response By Rseb (pdb code 3m4w). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the Structural Basis For the Negative Regulation of Bacterial Stress Response By Rseb, PDB code: 3m4w:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in the Structural Basis For the Negative Regulation of Bacterial Stress Response By Rseb


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structural Basis For the Negative Regulation of Bacterial Stress Response By Rseb within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1 b:60.4 occ:1.00 OE2 D:GLU178 2.1 50.6 1.0 OD2 A:ASP176 2.3 52.8 1.0 OE1 D:GLU178 2.4 45.7 1.0 OD1 A:ASP174 2.5 54.2 1.0 CD D:GLU178 2.5 51.7 1.0 OD1 A:ASP176 2.7 58.3 1.0 CG A:ASP176 2.8 48.3 1.0 CG A:ASP174 3.5 49.8 1.0 CD A:GLU178 3.5 65.7 1.0 OE2 A:GLU178 3.6 66.2 1.0 OE1 A:GLU178 3.6 62.0 1.0 CB A:GLU178 3.8 42.3 1.0 OD2 A:ASP174 3.8 53.1 1.0 CG D:GLU178 4.0 51.2 1.0 CG A:GLU178 4.2 51.9 1.0 CB A:ASP176 4.3 41.2 1.0 NH1 A:ARG278 4.6 47.2 1.0 CB A:ASP174 4.8 42.6 1.0 O A:HOH386 4.9 51.7 1.0 OD2 D:ASP174 4.9 44.1 1.0 CB D:GLU178 5.0 44.2 1.0

Zinc binding site 2 out of 6 in the Structural Basis For the Negative Regulation of Bacterial Stress Response By Rseb


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structural Basis For the Negative Regulation of Bacterial Stress Response By Rseb within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn5 b:0.5 occ:1.00 O A:HOH405 2.4 58.8 1.0 O A:HOH385 2.4 50.5 1.0 O A:HOH333 2.9 49.8 1.0 NH1 A:ARG61 3.5 31.8 1.0 NH2 A:ARG61 3.6 33.4 1.0 OG A:SER197 3.6 68.2 1.0 CZ A:ARG61 4.0 31.1 1.0 CB A:SER197 4.5 69.2 1.0 NH1 A:ARG59 4.6 31.8 1.0 NH2 A:ARG59 4.7 37.3 1.0

Zinc binding site 3 out of 6 in the Structural Basis For the Negative Regulation of Bacterial Stress Response By Rseb


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structural Basis For the Negative Regulation of Bacterial Stress Response By Rseb within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn2 b:55.1 occ:1.00 OE2 C:GLU178 2.2 55.5 1.0 OD1 B:ASP176 2.4 52.9 1.0 OD2 B:ASP174 2.4 41.0 1.0 OE1 C:GLU178 2.4 35.6 1.0 OD2 B:ASP176 2.5 52.6 1.0 CD C:GLU178 2.6 51.6 1.0 CG B:ASP176 2.8 38.2 1.0 CD B:GLU178 3.3 52.5 1.0 CG B:ASP174 3.3 39.4 1.0 OE2 B:GLU178 3.4 70.4 1.0 OE1 B:GLU178 3.6 81.8 1.0 OD1 B:ASP174 3.6 47.3 1.0 CG B:GLU178 3.7 40.3 1.0 CB B:GLU178 3.9 33.5 1.0 CG C:GLU178 4.1 46.0 1.0 CB B:ASP176 4.2 35.5 1.0 O C:HOH378 4.4 46.5 1.0 CB B:ASP174 4.6 35.0 1.0 NH1 B:ARG278 4.6 55.4 1.0 N B:GLU178 4.9 37.7 1.0 OD2 C:ASP174 5.0 62.5 1.0

Zinc binding site 4 out of 6 in the Structural Basis For the Negative Regulation of Bacterial Stress Response By Rseb


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structural Basis For the Negative Regulation of Bacterial Stress Response By Rseb within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn6 b:0.6 occ:1.00 O D:HOH357 2.9 50.6 1.0 NH1 B:ARG61 3.4 34.8 1.0 NH2 B:ARG61 3.7 38.0 1.0 CZ B:ARG61 4.0 31.4 1.0 OG B:SER197 4.0 60.4 1.0 O D:HOH390 4.0 59.4 1.0 NH1 B:ARG59 4.4 27.6 1.0 NH2 B:ARG59 4.6 33.2 1.0 CB B:SER197 4.9 64.5 1.0 CZ B:ARG59 5.0 33.2 1.0

Zinc binding site 5 out of 6 in the Structural Basis For the Negative Regulation of Bacterial Stress Response By Rseb


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Structural Basis For the Negative Regulation of Bacterial Stress Response By Rseb within 5.0Å range: probe atom residue distance (Å) B Occ E:Zn4 b:76.1 occ:1.00 O E:HOH401 1.9 30.3 1.0 O E:HOH247 2.3 50.7 1.0 ND1 E:HIS187 2.4 46.7 1.0 OE1 E:GLU189 2.8 58.9 1.0 CE1 E:HIS187 3.1 58.9 1.0 CG E:HIS187 3.2 52.6 1.0 CD E:GLU189 3.4 74.2 1.0 CB E:HIS187 3.6 48.5 1.0 CA E:HIS187 3.6 46.6 1.0 OE2 E:GLU189 3.6 87.2 1.0 O E:LEU186 3.9 44.6 1.0 NE2 E:HIS187 4.2 48.2 1.0 CD2 E:HIS187 4.2 53.2 1.0 CG1 A:VAL214 4.3 52.1 1.0 O A:VAL234 4.3 57.2 1.0 C E:HIS187 4.5 53.0 1.0 CG E:GLU189 4.5 69.8 1.0 N E:HIS187 4.6 45.7 1.0 C E:LEU186 4.6 44.0 1.0 O E:HIS187 4.6 55.1 1.0

Zinc binding site 6 out of 6 in the Structural Basis For the Negative Regulation of Bacterial Stress Response By Rseb


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Structural Basis For the Negative Regulation of Bacterial Stress Response By Rseb within 5.0Å range: probe atom residue distance (Å) B Occ F:Zn3 b:71.5 occ:1.00 ND1 F:HIS187 2.4 65.0 1.0 OE2 F:GLU189 2.7 77.6 1.0 CE1 F:HIS187 3.0 65.1 1.0 CG F:HIS187 3.1 61.0 1.0 OE1 F:GLU189 3.3 76.1 1.0 CD F:GLU189 3.4 83.3 1.0 CB F:HIS187 3.5 59.6 1.0 CA F:HIS187 3.6 53.1 1.0 O F:LEU186 3.7 50.9 1.0 CG1 B:VAL214 3.7 64.3 1.0 NE2 F:HIS187 3.9 65.8 1.0 CD2 F:HIS187 4.0 70.6 1.0 C F:LEU186 4.4 47.2 1.0 N F:HIS187 4.4 51.9 1.0 O B:VAL234 4.6 59.8 1.0 O B:HOH345 4.6 50.9 1.0 C F:HIS187 4.7 61.6 1.0 OG B:SER235 4.9 61.8 1.0 CG F:GLU189 4.9 79.6 1.0 O F:HIS187 4.9 59.9 1.0

D.Y.Kim, E.Kwon, J.K.Choi, H.-Y.Hwang, K.K.Kim. Structural Basis For the Negative Regulation of Bacterial Stress Response By Rseb Protein Sci. V. 19 1258 2010.
ISSN: ISSN 0961-8368
PubMed: 20512978
DOI: 10.1002/PRO.393