Zinc in PDB 9f29: Pyrococcus Abyssi Pold in Complex with RPA2 Winged-Helix Domain Class 1 (Composite Map)

All present enzymatic activity of Pyrococcus Abyssi Pold in Complex with RPA2 Winged-Helix Domain Class 1 (Composite Map):
2.7.7.7; 3.1.11.1;

The structure of Pyrococcus Abyssi Pold in Complex with RPA2 Winged-Helix Domain Class 1 (Composite Map) also contains other interesting chemical elements:

Iron

(Fe)

1 atom

The binding sites of Zinc atom in the Pyrococcus Abyssi Pold in Complex with RPA2 Winged-Helix Domain Class 1 (Composite Map) (pdb code 9f29). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Pyrococcus Abyssi Pold in Complex with RPA2 Winged-Helix Domain Class 1 (Composite Map), PDB code: 9f29:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Pyrococcus Abyssi Pold in Complex with RPA2 Winged-Helix Domain Class 1 (Composite Map)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Pyrococcus Abyssi Pold in Complex with RPA2 Winged-Helix Domain Class 1 (Composite Map) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1301 b:118.1 occ:1.00 SG B:CYS709 2.3 87.4 1.0 SG B:CYS718 2.3 70.6 1.0 SG B:CYS721 2.3 83.6 1.0 SG B:CYS706 2.3 70.8 1.0 CB B:CYS721 3.0 74.0 1.0 CB B:CYS709 3.1 72.1 1.0 CB B:CYS706 3.2 59.9 1.0 CB B:CYS718 3.5 61.5 1.0 N B:CYS721 3.8 77.1 1.0 N B:CYS709 3.9 72.2 1.0 CA B:CYS721 4.0 75.0 1.0 CA B:CYS709 4.1 72.1 1.0 OG1 B:THR723 4.6 64.3 1.0 CB B:HIS711 4.6 54.4 1.0 CA B:CYS706 4.7 56.0 1.0 C B:CYS709 4.7 73.4 1.0 N B:GLY710 4.8 59.1 1.0 CA B:CYS718 4.9 59.8 1.0 N B:HIS711 4.9 57.9 1.0

Zinc binding site 2 out of 3 in the Pyrococcus Abyssi Pold in Complex with RPA2 Winged-Helix Domain Class 1 (Composite Map)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Pyrococcus Abyssi Pold in Complex with RPA2 Winged-Helix Domain Class 1 (Composite Map) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1302 b:115.0 occ:1.00 SG B:CYS734 2.3 81.5 1.0 SG B:CYS731 2.3 85.4 1.0 SG B:CYS753 2.3 98.6 1.0 SG B:CYS750 2.3 79.8 1.0 CB B:CYS753 3.2 89.3 1.0 CB B:CYS731 3.4 67.2 1.0 CB B:CYS750 3.4 76.3 1.0 CB B:CYS734 3.6 72.3 1.0 N B:CYS734 4.0 71.7 1.0 N B:CYS753 4.2 86.1 1.0 CA B:CYS753 4.3 86.5 1.0 CA B:CYS734 4.4 71.3 1.0 CG2 B:VAL755 4.7 72.7 1.0 CA B:CYS731 4.8 60.1 1.0 CA B:CYS750 4.8 76.1 1.0 CB B:ARG733 4.9 76.2 1.0

Zinc binding site 3 out of 3 in the Pyrococcus Abyssi Pold in Complex with RPA2 Winged-Helix Domain Class 1 (Composite Map)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Pyrococcus Abyssi Pold in Complex with RPA2 Winged-Helix Domain Class 1 (Composite Map) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1303 b:81.6 occ:1.00 SG B:CYS1126 2.3 69.6 1.0 SG B:CYS1139 2.3 76.3 1.0 SG B:CYS1142 2.3 88.3 1.0 SG B:CYS1123 2.3 75.3 1.0 CB B:CYS1142 2.6 72.4 1.0 CB B:CYS1139 3.0 67.3 1.0 CB B:CYS1123 3.2 52.3 1.0 CB B:CYS1126 3.4 52.3 1.0 N B:CYS1142 3.6 76.4 1.0 N B:CYS1126 3.6 47.0 1.0 CA B:CYS1142 3.7 69.5 1.0 CA B:CYS1126 4.0 46.4 1.0 CA B:CYS1139 4.5 64.3 1.0 C B:CYS1126 4.6 65.7 1.0 CA B:CYS1123 4.7 47.1 1.0 CB B:LYS1125 4.7 64.0 1.0 C B:CYS1142 4.7 78.9 1.0 N B:GLY1143 4.7 82.0 1.0 C B:LYS1125 4.8 62.9 1.0 N B:GLY1144 4.8 56.7 1.0 N B:LYS1125 4.8 61.6 1.0 C B:VAL1141 4.9 73.8 1.0 OG1 B:THR1128 4.9 55.6 1.0 O B:CYS1126 4.9 72.2 1.0

M.Martinez-Carranza, L.Sauguet. Communication Between Dna Polymerases and Replication Protein A Within the Archaeal Replisome To Be Published.