Zinc in PDB 9dr6: Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Multivorans (Zinc Bound)

All present enzymatic activity of Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Multivorans (Zinc Bound):
1.13.11.1;

The structure of Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Multivorans (Zinc Bound), PDB code: 9dr6 was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	60.26 / 1.75
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	115.247, 52.271, 120.634, 90, 92.5, 90
R / Rfree (%)	15.3 / 19.2

The structure of Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Multivorans (Zinc Bound) also contains other interesting chemical elements:

Chlorine	(Cl)	2 atoms
Calcium	(Ca)	7 atoms

The binding sites of Zinc atom in the Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Multivorans (Zinc Bound) (pdb code 9dr6). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Multivorans (Zinc Bound), PDB code: 9dr6:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Multivorans (Zinc Bound)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Multivorans (Zinc Bound) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn402 b:21.1 occ:1.00 OH A:TYR164 1.9 17.5 1.0 NE2 A:HIS226 2.2 15.7 1.0 NE2 A:HIS224 2.2 24.9 1.0 CL A:CL407 2.2 39.0 1.0 OH A:TYR200 2.4 21.4 0.4 CZ A:TYR164 3.0 16.2 1.0 CD2 A:HIS226 3.1 14.3 1.0 CE1 A:HIS224 3.1 18.6 1.0 CE1 A:HIS226 3.2 17.0 1.0 CD2 A:HIS224 3.2 18.5 1.0 CZ A:TYR200 3.6 14.7 0.4 NH1 A:ARG221 3.6 29.7 0.4 CE1 A:TYR164 3.7 15.3 1.0 NH1 A:ARG221 3.8 18.7 0.6 CE2 A:TYR164 3.8 12.4 1.0 CE1 A:TYR200 3.9 14.9 0.4 O A:HOH527 4.0 15.7 1.0 ND1 A:HIS224 4.2 17.6 1.0 CG A:HIS226 4.2 13.4 1.0 ND1 A:HIS226 4.3 16.7 1.0 O A:HOH682 4.3 45.6 1.0 CG A:HIS224 4.3 14.8 1.0 O A:HOH711 4.4 12.8 1.0 CZ A:ARG221 4.7 32.1 0.4 CE2 A:TYR200 4.7 23.4 0.4 CZ A:ARG221 4.8 12.9 0.6 CD1 A:TYR164 5.0 19.3 1.0 CD1 A:LEU109 5.0 28.5 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Multivorans (Zinc Bound)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Multivorans (Zinc Bound) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn402 b:22.1 occ:1.00 OH B:TYR164 1.9 18.1 1.0 NE2 B:HIS226 2.2 17.3 1.0 NE2 B:HIS224 2.2 17.4 1.0 CL B:CL406 2.3 34.5 1.0 OH B:TYR200 2.4 21.1 0.6 CZ B:TYR164 2.9 18.9 1.0 CE1 B:HIS224 3.1 17.2 1.0 CD2 B:HIS226 3.1 18.3 1.0 CE1 B:HIS226 3.2 17.2 1.0 CD2 B:HIS224 3.2 20.1 1.0 CZ B:TYR200 3.6 29.4 0.6 CE1 B:TYR164 3.7 20.9 1.0 NH1 B:ARG221 3.7 32.5 0.4 CE2 B:TYR164 3.8 15.4 1.0 NH1 B:ARG221 3.8 15.8 0.6 O B:HOH536 3.9 15.1 1.0 CE1 B:TYR200 4.0 27.3 0.6 ND1 B:HIS224 4.2 18.1 1.0 ND1 B:HIS226 4.2 19.9 1.0 CG B:HIS226 4.3 17.1 1.0 CG B:HIS224 4.3 21.0 1.0 O B:HOH601 4.4 13.8 1.0 CE2 B:TYR200 4.7 20.6 0.6 CZ B:ARG221 4.9 15.8 0.6 CZ B:ARG221 4.9 22.4 0.4 CD1 B:LEU109 4.9 24.1 1.0 CD1 B:TYR164 5.0 16.9 1.0

L.Liu, P.Enayati, S.Lovell, G.W.Buchko, K.P.Battaile. Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Multivorans (Zinc Bound) To Be Published.