Zinc in PDB 9cre: Cryo-Em Structure of Sars-Cov-2 Spike Proteins on Intact Virions: Alpha (B.1.1.7) Variant 3 Closed Rbds

The binding sites of Zinc atom in the Cryo-Em Structure of Sars-Cov-2 Spike Proteins on Intact Virions: Alpha (B.1.1.7) Variant 3 Closed Rbds (pdb code 9cre). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure of Sars-Cov-2 Spike Proteins on Intact Virions: Alpha (B.1.1.7) Variant 3 Closed Rbds, PDB code: 9cre:

Zinc binding site 1 out of 1 in the Cryo-Em Structure of Sars-Cov-2 Spike Proteins on Intact Virions: Alpha (B.1.1.7) Variant 3 Closed Rbds


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Sars-Cov-2 Spike Proteins on Intact Virions: Alpha (B.1.1.7) Variant 3 Closed Rbds within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1307 b:35.8 occ:1.00 NE2 C:HIS1118 2.3 68.0 1.0 NE2 A:HIS1118 2.3 68.0 1.0 NE2 B:HIS1118 2.3 68.0 1.0 CD2 C:HIS1118 3.0 67.2 1.0 CD2 B:HIS1118 3.0 67.2 1.0 CD2 A:HIS1118 3.0 67.2 1.0 CE1 A:HIS1118 3.4 69.9 1.0 CE1 B:HIS1118 3.4 69.9 1.0 CE1 C:HIS1118 3.4 69.9 1.0 CG C:HIS1118 4.2 68.4 1.0 CG B:HIS1118 4.2 68.4 1.0 CG A:HIS1118 4.2 68.4 1.0 ND1 C:HIS1118 4.3 71.6 1.0 ND1 A:HIS1118 4.3 71.6 1.0 ND1 B:HIS1118 4.3 71.6 1.0

Z.Ke, T.P.Peacock, J.C.Brown, C.M.Sheppard, T.I.Croll, A.Kotecha, D.H.Goldhill, W.S.Barclay, J.A.G.Briggs. Virion Morphology and on-Virus Spike Protein Structures of Diverse Sars-Cov-2 Variants. Embo J. 2024.
ISSN: ESSN 1460-2075
PubMed: 39543395
DOI: 10.1038/S44318-024-00303-1