Zinc in PDB 9bwg: Homomeric ALPHA3 Glycine Receptor in the Presence of 0.1 Mm Glycine and 0.1 Mm Zinc in A Desensitized State

Zinc Binding Sites:

The binding sites of Zinc atom in the Homomeric ALPHA3 Glycine Receptor in the Presence of 0.1 Mm Glycine and 0.1 Mm Zinc in A Desensitized State (pdb code 9bwg). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 10 binding sites of Zinc where determined in the Homomeric ALPHA3 Glycine Receptor in the Presence of 0.1 Mm Glycine and 0.1 Mm Zinc in A Desensitized State, PDB code: 9bwg:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 10 in 9bwg

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Zinc binding site 1 out of 10 in the Homomeric ALPHA3 Glycine Receptor in the Presence of 0.1 Mm Glycine and 0.1 Mm Zinc in A Desensitized State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Homomeric ALPHA3 Glycine Receptor in the Presence of 0.1 Mm Glycine and 0.1 Mm Zinc in A Desensitized State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn502

b:114.3
occ:1.00
 NE2 A:HIS427 2.0 107.9 1.0
OE2 A:GLU192 2.1 91.2 1.0
OD1 A:ASP194 2.1 90.5 1.0
OD2 A:ASP194 2.2 90.5 1.0
NE2 A:HIS215 2.3 83.6 1.0
CG A:ASP194 2.4 90.5 1.0
CD A:GLU192 3.0 91.2 1.0
CD2 A:HIS427 3.0 107.9 1.0
CE1 A:HIS427 3.0 107.9 1.0
OE1 A:GLU192 3.2 91.2 1.0
CE1 A:HIS215 3.2 83.6 1.0
CD2 A:HIS215 3.3 83.6 1.0
CB A:ASP194 3.9 90.5 1.0
CD1 A:ILE426 4.0 108.7 1.0
ND1 A:HIS427 4.1 107.9 1.0
CG A:HIS427 4.1 107.9 1.0
ND1 A:HIS215 4.3 83.6 1.0
CG A:GLU192 4.3 91.2 1.0
CG A:HIS215 4.4 83.6 1.0
N A:ASP194 4.5 90.5 1.0
CA A:ASP194 4.6 90.5 1.0
CG1 A:ILE426 4.7 108.7 1.0
C A:LYS193 4.7 87.8 1.0

Zinc binding site 2 out of 10 in 9bwg

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Zinc binding site 2 out of 10 in the Homomeric ALPHA3 Glycine Receptor in the Presence of 0.1 Mm Glycine and 0.1 Mm Zinc in A Desensitized State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Homomeric ALPHA3 Glycine Receptor in the Presence of 0.1 Mm Glycine and 0.1 Mm Zinc in A Desensitized State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn503

b:101.7
occ:1.00
 O A:HOH603 2.5 20.0 1.0
OE1 A:GLU103 2.5 80.4 1.0
OE2 A:GLU103 2.5 80.4 1.0
CD A:GLU103 2.8 80.4 1.0
ND1 B:HIS109 2.9 80.4 1.0
CB B:HIS109 3.4 80.4 1.0
CG B:HIS109 3.5 80.4 1.0
CB B:VAL111 3.7 80.4 1.0
CA B:HIS109 3.8 80.4 1.0
CB A:ALA106 3.9 80.4 1.0
N B:VAL111 3.9 80.4 1.0
N B:GLU110 4.0 80.4 1.0
CE1 B:HIS109 4.0 80.4 1.0
CA B:VAL111 4.1 80.4 1.0
N A:ALA106 4.2 80.4 1.0
CG A:GLU103 4.2 80.4 1.0
C B:HIS109 4.3 80.4 1.0
CG1 B:VAL111 4.3 80.4 1.0
O A:ALA106 4.5 80.4 1.0
NH1 B:ARG131 4.5 80.4 1.0
CA A:ALA106 4.5 80.4 1.0
C B:GLU110 4.6 80.4 1.0
CG2 B:VAL111 4.7 80.4 1.0
CD2 B:HIS109 4.8 80.4 1.0
C A:GLY105 4.8 80.4 1.0
C A:ALA106 4.8 80.4 1.0
NE2 B:HIS109 5.0 80.4 1.0
CA B:GLU110 5.0 80.4 1.0

Zinc binding site 3 out of 10 in 9bwg

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Zinc binding site 3 out of 10 in the Homomeric ALPHA3 Glycine Receptor in the Presence of 0.1 Mm Glycine and 0.1 Mm Zinc in A Desensitized State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Homomeric ALPHA3 Glycine Receptor in the Presence of 0.1 Mm Glycine and 0.1 Mm Zinc in A Desensitized State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn502

b:114.3
occ:1.00
 NE2 B:HIS427 2.0 107.9 1.0
OE2 B:GLU192 2.1 91.2 1.0
OD1 B:ASP194 2.1 90.5 1.0
OD2 B:ASP194 2.2 90.5 1.0
NE2 B:HIS215 2.3 83.6 1.0
CG B:ASP194 2.4 90.5 1.0
CD B:GLU192 3.0 91.2 1.0
CD2 B:HIS427 3.0 107.9 1.0
CE1 B:HIS427 3.0 107.9 1.0
OE1 B:GLU192 3.2 91.2 1.0
CE1 B:HIS215 3.2 83.6 1.0
CD2 B:HIS215 3.3 83.6 1.0
CB B:ASP194 3.9 90.5 1.0
CD1 B:ILE426 4.0 108.7 1.0
ND1 B:HIS427 4.1 107.9 1.0
CG B:HIS427 4.1 107.9 1.0
ND1 B:HIS215 4.3 83.6 1.0
CG B:GLU192 4.3 91.2 1.0
CG B:HIS215 4.4 83.6 1.0
N B:ASP194 4.5 90.5 1.0
CA B:ASP194 4.6 90.5 1.0
CG1 B:ILE426 4.7 108.7 1.0
C B:LYS193 4.7 87.8 1.0

Zinc binding site 4 out of 10 in 9bwg

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Zinc binding site 4 out of 10 in the Homomeric ALPHA3 Glycine Receptor in the Presence of 0.1 Mm Glycine and 0.1 Mm Zinc in A Desensitized State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Homomeric ALPHA3 Glycine Receptor in the Presence of 0.1 Mm Glycine and 0.1 Mm Zinc in A Desensitized State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn503

b:101.7
occ:1.00
 O B:HOH603 2.5 20.0 1.0
OE1 B:GLU103 2.5 80.4 1.0
OE2 B:GLU103 2.5 80.4 1.0
CD B:GLU103 2.8 80.4 1.0
ND1 C:HIS109 2.9 80.4 1.0
CB C:HIS109 3.5 80.4 1.0
CG C:HIS109 3.5 80.4 1.0
CB C:VAL111 3.7 80.4 1.0
CA C:HIS109 3.9 80.4 1.0
CB B:ALA106 3.9 80.4 1.0
N C:VAL111 4.0 80.4 1.0
CE1 C:HIS109 4.0 80.4 1.0
N C:GLU110 4.1 80.4 1.0
CA C:VAL111 4.1 80.4 1.0
N B:ALA106 4.2 80.4 1.0
CG B:GLU103 4.2 80.4 1.0
CG1 C:VAL111 4.3 80.4 1.0
C C:HIS109 4.3 80.4 1.0
NH1 C:ARG131 4.5 80.4 1.0
O B:ALA106 4.5 80.4 1.0
CA B:ALA106 4.5 80.4 1.0
CG2 C:VAL111 4.7 80.4 1.0
C C:GLU110 4.7 80.4 1.0
CD2 C:HIS109 4.8 80.4 1.0
C B:GLY105 4.8 80.4 1.0
C B:ALA106 4.8 80.4 1.0
NE2 C:HIS109 5.0 80.4 1.0

Zinc binding site 5 out of 10 in 9bwg

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Zinc binding site 5 out of 10 in the Homomeric ALPHA3 Glycine Receptor in the Presence of 0.1 Mm Glycine and 0.1 Mm Zinc in A Desensitized State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Homomeric ALPHA3 Glycine Receptor in the Presence of 0.1 Mm Glycine and 0.1 Mm Zinc in A Desensitized State within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn502

b:114.3
occ:1.00
 NE2 C:HIS427 2.0 107.9 1.0
OE2 C:GLU192 2.1 91.2 1.0
OD1 C:ASP194 2.1 90.5 1.0
OD2 C:ASP194 2.2 90.5 1.0
NE2 C:HIS215 2.3 83.6 1.0
CG C:ASP194 2.4 90.5 1.0
CD C:GLU192 3.0 91.2 1.0
CD2 C:HIS427 3.0 107.9 1.0
CE1 C:HIS427 3.0 107.9 1.0
OE1 C:GLU192 3.2 91.2 1.0
CE1 C:HIS215 3.2 83.6 1.0
CD2 C:HIS215 3.3 83.6 1.0
CB C:ASP194 3.9 90.5 1.0
CD1 C:ILE426 4.0 108.7 1.0
ND1 C:HIS427 4.1 107.9 1.0
CG C:HIS427 4.1 107.9 1.0
ND1 C:HIS215 4.3 83.6 1.0
CG C:GLU192 4.3 91.2 1.0
CG C:HIS215 4.4 83.6 1.0
N C:ASP194 4.5 90.5 1.0
CA C:ASP194 4.6 90.5 1.0
CG1 C:ILE426 4.7 108.7 1.0
C C:LYS193 4.7 87.8 1.0

Zinc binding site 6 out of 10 in 9bwg

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Zinc binding site 6 out of 10 in the Homomeric ALPHA3 Glycine Receptor in the Presence of 0.1 Mm Glycine and 0.1 Mm Zinc in A Desensitized State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Homomeric ALPHA3 Glycine Receptor in the Presence of 0.1 Mm Glycine and 0.1 Mm Zinc in A Desensitized State within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn503

b:101.7
occ:1.00
 O C:HOH603 2.5 20.0 1.0
OE1 C:GLU103 2.5 80.4 1.0
OE2 C:GLU103 2.5 80.4 1.0
CD C:GLU103 2.8 80.4 1.0
ND1 D:HIS109 2.9 80.4 1.0
CB D:HIS109 3.4 80.4 1.0
CG D:HIS109 3.5 80.4 1.0
CB D:VAL111 3.6 80.4 1.0
CA D:HIS109 3.8 80.4 1.0
N D:VAL111 3.8 80.4 1.0
CB C:ALA106 3.9 80.4 1.0
N D:GLU110 3.9 80.4 1.0
CE1 D:HIS109 4.0 80.4 1.0
CA D:VAL111 4.0 80.4 1.0
N C:ALA106 4.2 80.4 1.0
CG C:GLU103 4.2 80.4 1.0
CG1 D:VAL111 4.2 80.4 1.0
C D:HIS109 4.2 80.4 1.0
NH1 D:ARG131 4.5 80.4 1.0
O C:ALA106 4.5 80.4 1.0
CA C:ALA106 4.5 80.4 1.0
C D:GLU110 4.6 80.4 1.0
CG2 D:VAL111 4.6 80.4 1.0
CD2 D:HIS109 4.8 80.4 1.0
C C:GLY105 4.8 80.4 1.0
C C:ALA106 4.8 80.4 1.0
CA D:GLU110 4.9 80.4 1.0
NE2 D:HIS109 5.0 80.4 1.0

Zinc binding site 7 out of 10 in 9bwg

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Zinc binding site 7 out of 10 in the Homomeric ALPHA3 Glycine Receptor in the Presence of 0.1 Mm Glycine and 0.1 Mm Zinc in A Desensitized State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Homomeric ALPHA3 Glycine Receptor in the Presence of 0.1 Mm Glycine and 0.1 Mm Zinc in A Desensitized State within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn502

b:114.3
occ:1.00
 NE2 D:HIS427 2.0 107.9 1.0
OE2 D:GLU192 2.1 91.2 1.0
OD1 D:ASP194 2.1 90.5 1.0
OD2 D:ASP194 2.2 90.5 1.0
NE2 D:HIS215 2.3 83.6 1.0
CG D:ASP194 2.4 90.5 1.0
CD D:GLU192 3.0 91.2 1.0
CD2 D:HIS427 3.0 107.9 1.0
CE1 D:HIS427 3.0 107.9 1.0
OE1 D:GLU192 3.2 91.2 1.0
CE1 D:HIS215 3.2 83.6 1.0
CD2 D:HIS215 3.3 83.6 1.0
CB D:ASP194 3.9 90.5 1.0
CD1 D:ILE426 4.0 108.7 1.0
ND1 D:HIS427 4.1 107.9 1.0
CG D:HIS427 4.1 107.9 1.0
ND1 D:HIS215 4.3 83.6 1.0
CG D:GLU192 4.3 91.2 1.0
CG D:HIS215 4.4 83.6 1.0
N D:ASP194 4.5 90.5 1.0
CA D:ASP194 4.6 90.5 1.0
CG1 D:ILE426 4.7 108.7 1.0
C D:LYS193 4.7 87.8 1.0

Zinc binding site 8 out of 10 in 9bwg

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Zinc binding site 8 out of 10 in the Homomeric ALPHA3 Glycine Receptor in the Presence of 0.1 Mm Glycine and 0.1 Mm Zinc in A Desensitized State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Homomeric ALPHA3 Glycine Receptor in the Presence of 0.1 Mm Glycine and 0.1 Mm Zinc in A Desensitized State within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn503

b:101.7
occ:1.00
 O D:HOH603 2.5 20.0 1.0
OE1 D:GLU103 2.5 80.4 1.0
OE2 D:GLU103 2.5 80.4 1.0
CD D:GLU103 2.8 80.4 1.0
ND1 E:HIS109 2.8 80.4 1.0
CB E:HIS109 3.4 80.4 1.0
CG E:HIS109 3.5 80.4 1.0
CB E:VAL111 3.8 80.4 1.0
CA E:HIS109 3.8 80.4 1.0
CB D:ALA106 3.9 80.4 1.0
CE1 E:HIS109 3.9 80.4 1.0
N E:VAL111 4.0 80.4 1.0
N E:GLU110 4.1 80.4 1.0
N D:ALA106 4.2 80.4 1.0
CG D:GLU103 4.2 80.4 1.0
CA E:VAL111 4.2 80.4 1.0
C E:HIS109 4.3 80.4 1.0
CG1 E:VAL111 4.4 80.4 1.0
O D:ALA106 4.5 80.4 1.0
NH1 E:ARG131 4.5 80.4 1.0
CA D:ALA106 4.5 80.4 1.0
CD2 E:HIS109 4.7 80.4 1.0
C E:GLU110 4.8 80.4 1.0
CG2 E:VAL111 4.8 80.4 1.0
C D:GLY105 4.8 80.4 1.0
C D:ALA106 4.8 80.4 1.0
NE2 E:HIS109 4.9 80.4 1.0

Zinc binding site 9 out of 10 in 9bwg

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Zinc binding site 9 out of 10 in the Homomeric ALPHA3 Glycine Receptor in the Presence of 0.1 Mm Glycine and 0.1 Mm Zinc in A Desensitized State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Homomeric ALPHA3 Glycine Receptor in the Presence of 0.1 Mm Glycine and 0.1 Mm Zinc in A Desensitized State within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn601

b:114.3
occ:1.00
 NE2 E:HIS427 2.0 107.9 1.0
OE2 E:GLU192 2.1 91.2 1.0
OD1 E:ASP194 2.1 90.5 1.0
OD2 E:ASP194 2.2 90.5 1.0
NE2 E:HIS215 2.3 83.6 1.0
CG E:ASP194 2.4 90.5 1.0
CD E:GLU192 3.0 91.2 1.0
CD2 E:HIS427 3.0 107.9 1.0
CE1 E:HIS427 3.0 107.9 1.0
OE1 E:GLU192 3.2 91.2 1.0
CE1 E:HIS215 3.2 83.6 1.0
CD2 E:HIS215 3.3 83.6 1.0
CB E:ASP194 3.9 90.5 1.0
CD1 E:ILE426 4.0 108.7 1.0
ND1 E:HIS427 4.1 107.9 1.0
CG E:HIS427 4.1 107.9 1.0
ND1 E:HIS215 4.3 83.6 1.0
CG E:GLU192 4.3 91.2 1.0
CG E:HIS215 4.4 83.6 1.0
N E:ASP194 4.5 90.5 1.0
CA E:ASP194 4.6 90.5 1.0
CG1 E:ILE426 4.7 108.7 1.0
C E:LYS193 4.7 87.8 1.0

Zinc binding site 10 out of 10 in 9bwg

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Zinc binding site 10 out of 10 in the Homomeric ALPHA3 Glycine Receptor in the Presence of 0.1 Mm Glycine and 0.1 Mm Zinc in A Desensitized State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Homomeric ALPHA3 Glycine Receptor in the Presence of 0.1 Mm Glycine and 0.1 Mm Zinc in A Desensitized State within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn602

b:101.7
occ:1.00
 O E:HOH703 2.5 20.0 1.0
OE1 E:GLU103 2.5 80.4 1.0
OE2 E:GLU103 2.5 80.4 1.0
CD E:GLU103 2.8 80.4 1.0
ND1 A:HIS109 2.9 80.4 1.0
CB A:HIS109 3.5 80.4 1.0
CG A:HIS109 3.6 80.4 1.0
CB A:VAL111 3.7 80.4 1.0
CA A:HIS109 3.9 80.4 1.0
CB E:ALA106 3.9 80.4 1.0
N A:VAL111 3.9 80.4 1.0
CE1 A:HIS109 4.0 80.4 1.0
N A:GLU110 4.0 80.4 1.0
CA A:VAL111 4.1 80.4 1.0
N E:ALA106 4.1 80.4 1.0
CG E:GLU103 4.2 80.4 1.0
CG1 A:VAL111 4.3 80.4 1.0
C A:HIS109 4.3 80.4 1.0
O E:ALA106 4.5 80.4 1.0
CA E:ALA106 4.5 80.4 1.0
NH1 A:ARG131 4.5 80.4 1.0
CG2 A:VAL111 4.7 80.4 1.0
C A:GLU110 4.7 80.4 1.0
C E:GLY105 4.8 80.4 1.0
CD2 A:HIS109 4.8 80.4 1.0
C E:ALA106 4.8 80.4 1.0
NE2 A:HIS109 5.0 80.4 1.0

Reference:

K.Kindig, E.Gibbs, S.Chakrapani. Physiological Modulation of ALPHA3 Glycine Receptors To Be Published.
Page generated: Wed Nov 27 21:10:19 2024

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