Zinc in PDB 9bw1: Tnsabcd-Dna Transpososome

The structure of Tnsabcd-Dna Transpososome also contains other interesting chemical elements:

Magnesium

(Mg)

11 atoms

The binding sites of Zinc atom in the Tnsabcd-Dna Transpososome (pdb code 9bw1). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Tnsabcd-Dna Transpososome, PDB code: 9bw1:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Tnsabcd-Dna Transpososome


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Tnsabcd-Dna Transpososome within 5.0Å range: probe atom residue distance (Å) B Occ J:Zn601 b:90.9 occ:1.00 ND1 J:HIS170 2.1 95.6 1.0 SG J:CYS139 2.3 87.2 1.0 SG J:CYS167 2.3 99.1 1.0 SG J:CYS142 2.3 75.3 1.0 CG J:HIS170 2.9 89.5 1.0 CB J:HIS170 3.1 89.0 1.0 CB J:CYS142 3.1 86.9 1.0 CE1 J:HIS170 3.2 94.1 1.0 N J:CYS142 3.4 88.2 1.0 CB J:CYS167 3.5 97.4 1.0 CB J:CYS139 3.5 94.4 1.0 CA J:CYS142 3.7 87.5 1.0 N J:HIS170 3.7 89.9 1.0 CA J:HIS170 4.0 90.8 1.0 CD2 J:HIS170 4.1 89.1 1.0 NE2 J:HIS170 4.2 90.9 1.0 CB J:GLN169 4.3 97.1 1.0 C J:ILE141 4.4 96.3 1.0 CB J:ILE141 4.5 98.3 1.0 C J:GLN169 4.5 93.9 1.0 OH J:TYR37 4.8 88.4 1.0 CA J:GLN169 4.8 93.9 1.0 CA J:ILE141 4.9 97.3 1.0 CA J:CYS167 4.9 97.6 1.0 CA J:CYS139 4.9 97.0 1.0 N J:GLN169 4.9 92.9 1.0 CD1 J:ILE141 5.0 94.3 1.0 C J:HIS170 5.0 95.5 1.0 O J:CYS139 5.0 95.4 1.0

Zinc binding site 2 out of 2 in the Tnsabcd-Dna Transpososome


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Tnsabcd-Dna Transpososome within 5.0Å range: probe atom residue distance (Å) B Occ J:Zn602 b:198.3 occ:1.00 SG J:CYS178 2.3 112.1 1.0 SG J:CYS200 2.3 102.5 1.0 SG J:CYS197 2.3 94.4 1.0 SG J:CYS181 2.3 114.1 1.0 CB J:CYS200 2.7 93.9 1.0 CB J:CYS197 2.7 88.0 1.0 CB J:CYS178 3.3 105.6 1.0 N J:CYS200 3.5 100.9 1.0 CA J:CYS200 3.7 94.4 1.0 CB J:CYS181 4.0 110.8 1.0 CA J:CYS197 4.2 85.8 1.0 N J:CYS181 4.3 108.3 1.0 O J:CYS181 4.4 109.1 1.0 C J:CYS200 4.4 95.3 1.0 N J:GLY201 4.4 90.3 1.0 CA J:CYS181 4.7 109.8 1.0 C J:LYS199 4.7 96.3 1.0 CA J:CYS178 4.7 104.1 1.0 CD2 J:LEU204 4.8 88.3 1.0 C J:CYS197 5.0 90.9 1.0 N J:LYS199 5.0 92.0 1.0 OE1 J:GLU202 5.0 97.5 1.0

S.Wang, R.Siddique, M.C.Hall, P.A.Rice, L.Chang. Structure of Tnsabcd Transpososome Reveals Mechanisms of Targeted Dna Transposition. Cell 2024.
ISSN: ISSN 1097-4172
PubMed: 39383864
DOI: 10.1016/J.CELL.2024.09.023