Zinc in PDB 9bdq: The Structure of Niv L-P Complex

All present enzymatic activity of The Structure of Niv L-P Complex:
2.7.7.48; 2.7.7.88;

The binding sites of Zinc atom in the The Structure of Niv L-P Complex (pdb code 9bdq). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the The Structure of Niv L-P Complex, PDB code: 9bdq:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the The Structure of Niv L-P Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Structure of Niv L-P Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn2301 b:108.6 occ:1.00 NE2 A:HIS1423 1.9 76.0 1.0 ND1 A:HIS1421 2.1 65.8 1.0 SG A:CYS1236 2.3 77.8 1.0 SG A:CYS1239 2.3 99.8 1.0 CE1 A:HIS1423 2.5 74.8 1.0 CE1 A:HIS1421 2.8 62.4 1.0 CB A:CYS1239 3.0 86.0 1.0 CD2 A:HIS1423 3.1 57.9 1.0 CG A:HIS1421 3.2 65.0 1.0 N A:CYS1239 3.5 80.0 1.0 CA A:CYS1239 3.7 77.5 1.0 ND1 A:HIS1423 3.7 66.5 1.0 CB A:HIS1421 3.8 58.6 1.0 CB A:CYS1236 4.0 84.6 1.0 NE2 A:HIS1421 4.0 53.8 1.0 CG A:HIS1423 4.1 54.1 1.0 CD2 A:HIS1421 4.2 55.5 1.0 CD1 A:TYR1246 4.3 64.7 1.0 C A:ILE1238 4.5 80.6 1.0 CG A:TYR1246 4.5 60.1 1.0 CE1 A:TYR1246 4.5 67.6 1.0 CB A:ILE1238 4.6 74.5 1.0 O A:ASN1243 4.7 87.7 1.0 O A:CYS1236 4.8 87.6 1.0 CD2 A:TYR1246 4.9 60.7 1.0 CZ A:TYR1246 4.9 67.4 1.0 OE1 A:GLU1235 4.9 95.5 1.0 CB A:TYR1246 4.9 64.2 1.0

Zinc binding site 2 out of 2 in the The Structure of Niv L-P Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Structure of Niv L-P Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn2302 b:135.1 occ:1.00 SG A:CYS1429 2.3 91.3 1.0 SG A:CYS1428 2.3 110.8 1.0 SG A:CYS1191 2.3 90.9 1.0 OE2 A:GLU1223 2.7 71.7 1.0 O A:CYS1428 2.8 107.6 1.0 C A:CYS1428 3.1 102.9 1.0 CB A:CYS1191 3.2 65.1 1.0 CB A:CYS1429 3.6 87.0 1.0 CB A:CYS1428 3.6 102.5 1.0 CD A:GLU1223 3.7 69.9 1.0 N A:CYS1429 3.7 85.8 1.0 CA A:CYS1428 3.8 102.5 1.0 CA A:CYS1191 3.9 60.5 1.0 CG A:GLU1223 3.9 64.3 1.0 CA A:CYS1429 3.9 85.5 1.0 N A:SER1192 4.6 61.4 1.0 OE1 A:GLU1223 4.8 75.5 1.0 C A:CYS1191 4.8 64.2 1.0 N A:CYS1191 4.9 63.4 1.0

S.Hu, H.Kim, P.Yang, Z.Yu, B.Ludeke, S.Mobilia, J.Pan, M.Stratton, Y.Bian, R.Fearns, J.Abraham. Structural and Functional Analysis of the Nipah Virus Polymerase Complex Cell(Cambridge,Mass.) 2025.
ISSN: ISSN 0092-8674
DOI: 10.1016/J.CELL.2024.12.021