Zinc in PDB 9azj: Structure of Ubiquitinated Nemo Uban K285C-Ub G76C Bound to Hoip NZF1

All present enzymatic activity of Structure of Ubiquitinated Nemo Uban K285C-Ub G76C Bound to Hoip NZF1:
2.3.2.31;

The structure of Structure of Ubiquitinated Nemo Uban K285C-Ub G76C Bound to Hoip NZF1, PDB code: 9azj was solved by M.A.Michel, S.Scutts, D.Komander, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.72 / 3.32
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	66.828, 101.447, 144.14, 90, 90, 90
R / Rfree (%)	24.1 / 28.5

The binding sites of Zinc atom in the Structure of Ubiquitinated Nemo Uban K285C-Ub G76C Bound to Hoip NZF1 (pdb code 9azj). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of Ubiquitinated Nemo Uban K285C-Ub G76C Bound to Hoip NZF1, PDB code: 9azj:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structure of Ubiquitinated Nemo Uban K285C-Ub G76C Bound to Hoip NZF1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Ubiquitinated Nemo Uban K285C-Ub G76C Bound to Hoip NZF1 within 5.0Å range: probe atom residue distance (Å) B Occ E:Zn401 b:370.1 occ:1.00 SG E:CYS373 2.3 433.4 1.0 SG E:CYS356 2.3 514.4 1.0 SG E:CYS359 2.3 390.8 1.0 SG E:CYS370 2.3 409.3 1.0 CB E:CYS356 2.9 508.3 1.0 CB E:CYS370 3.0 386.2 1.0 CB E:CYS373 3.6 412.7 1.0 OG E:SER358 3.7 468.2 1.0 CB E:CYS359 3.9 410.1 1.0 CG2 E:ILE372 4.0 328.1 1.0 N E:CYS373 4.2 430.2 1.0 N E:CYS359 4.2 461.0 1.0 CA E:CYS356 4.4 503.3 1.0 CB E:PHE361 4.5 355.2 1.0 CA E:CYS373 4.5 420.2 1.0 CA E:CYS370 4.5 370.2 1.0 CA E:CYS359 4.6 427.3 1.0 N E:PHE361 4.9 380.5 1.0

Zinc binding site 2 out of 2 in the Structure of Ubiquitinated Nemo Uban K285C-Ub G76C Bound to Hoip NZF1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Ubiquitinated Nemo Uban K285C-Ub G76C Bound to Hoip NZF1 within 5.0Å range: probe atom residue distance (Å) B Occ G:Zn401 b:143.8 occ:1.00 SG G:CYS370 2.3 129.0 1.0 SG G:CYS359 2.3 98.5 1.0 SG G:CYS373 2.3 138.7 1.0 SG G:CYS356 2.3 106.2 1.0 CB G:CYS370 2.9 116.6 1.0 CB G:CYS356 3.0 117.7 1.0 CB G:CYS373 3.5 125.0 1.0 CB G:CYS359 3.6 102.4 1.0 N G:CYS359 3.9 111.5 1.0 N G:CYS373 3.9 133.7 1.0 CA G:CYS359 4.3 104.2 1.0 CA G:CYS373 4.3 117.6 1.0 CA G:CYS370 4.4 105.0 1.0 CA G:CYS356 4.5 114.8 1.0 CB G:SER358 4.7 96.5 1.0 C G:CYS359 4.8 99.5 1.0 CB G:PHE361 4.8 104.2 1.0 C G:CYS373 4.9 112.5 1.0 C G:SER358 4.9 101.4 1.0 CB G:ILE372 4.9 111.5 1.0 N G:GLU374 4.9 110.3 1.0 N G:PHE361 5.0 85.7 1.0 N G:THR360 5.0 107.8 1.0 C G:CYS370 5.0 114.8 1.0 N G:SER358 5.0 115.0 1.0

M.A.Michel, S.Scutts, D.Komander. Structure of TAB2 Nzf Domain Bound to K6 / LYS6-Linked Diubiquitin To Be Published.