Zinc in PDB 8ztq: Crystal Structure of Sufu From Mycoplasma Pneumonia

The structure of Crystal Structure of Sufu From Mycoplasma Pneumonia, PDB code: 8ztq was solved by W.M.Wang, D.Y.Ma, W.J.Gong, H.Yao, Y.H.Liu, H.F.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.78 / 2.89
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	149.08, 30.333, 87.209, 90, 122.48, 90
R / Rfree (%)	27.1 / 29.9

The binding sites of Zinc atom in the Crystal Structure of Sufu From Mycoplasma Pneumonia (pdb code 8ztq). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Sufu From Mycoplasma Pneumonia, PDB code: 8ztq:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Sufu From Mycoplasma Pneumonia


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Sufu From Mycoplasma Pneumonia within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:27.3 occ:1.00 OD2 A:ASP50 1.9 27.3 1.0 SG A:CYS73 2.3 32.0 1.0 SG A:CYS48 2.5 27.2 1.0 SG A:CYS134 2.5 32.5 1.0 CG A:ASP50 2.6 27.0 1.0 OD1 A:ASP50 2.7 26.6 1.0 CB A:CYS48 2.8 34.5 1.0 CB A:CYS134 3.2 27.9 1.0 CB A:CYS73 3.4 42.9 1.0 CB A:ASP50 4.1 27.2 1.0 CA A:CYS134 4.1 44.6 1.0 NH1 A:ARG131 4.3 27.6 1.0 CA A:CYS48 4.3 33.1 1.0 N A:CYS73 4.4 47.2 1.0 CA A:CYS73 4.5 25.9 1.0 OG A:SER76 4.6 35.3 1.0 N A:ILE49 4.7 27.0 1.0 N A:ASP50 4.8 38.2 1.0 CB A:SER76 4.8 26.7 1.0 C A:CYS48 5.0 38.3 1.0 CA A:ASP50 5.0 33.7 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Sufu From Mycoplasma Pneumonia


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Sufu From Mycoplasma Pneumonia within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn201 b:32.0 occ:1.00 OD2 B:ASP50 2.1 30.4 1.0 SG B:CYS134 2.4 35.4 1.0 SG B:CYS48 2.4 43.0 1.0 SG B:CYS73 2.4 29.7 1.0 CB B:CYS48 2.6 30.6 1.0 OD1 B:ASP50 2.7 34.9 1.0 CG B:ASP50 2.7 29.8 1.0 CB B:CYS134 3.2 35.2 1.0 CB B:CYS73 3.4 32.0 1.0 OG B:SER76 3.7 87.2 1.0 CA B:CYS134 4.1 39.9 1.0 CA B:CYS48 4.1 35.5 1.0 CB B:ASP50 4.2 33.0 1.0 N B:CYS73 4.3 47.0 1.0 CA B:CYS73 4.5 33.1 1.0 N B:ILE49 4.6 44.8 1.0 NE B:ARG131 4.7 43.0 1.0 N B:ASP50 4.8 42.8 1.0 CB B:SER76 4.8 29.2 1.0 NH2 B:ARG131 4.8 30.5 1.0 N B:CYS48 4.8 45.4 1.0 C B:CYS48 4.9 34.6 1.0 N B:CYS134 4.9 47.3 1.0

D.Ma, H.Yao, Y.Liu, W.Gong, Y.Zhao, R.Wang, C.Wu, W.Wang, H.Wang. The Reduced Interaction Between Sufs and Sufu in Mycoplasma Penetrans Results in Diminished Sulfotransferase Activity. Int.J.Biol.Macromol. 38181 2024.
ISSN: ISSN 0141-8130
PubMed: 39615726
DOI: 10.1016/J.IJBIOMAC.2024.138181