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Zinc in PDB 8zsb: Cryo-Em Structure of Human ZNT1, in the Absence of Zinc, Determined in Outward-Facing Conformation

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryo-Em Structure of Human ZNT1, in the Absence of Zinc, Determined in Outward-Facing Conformation (pdb code 8zsb). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em Structure of Human ZNT1, in the Absence of Zinc, Determined in Outward-Facing Conformation, PDB code: 8zsb:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 8zsb

Go back to Zinc Binding Sites List in 8zsb
Zinc binding site 1 out of 2 in the Cryo-Em Structure of Human ZNT1, in the Absence of Zinc, Determined in Outward-Facing Conformation


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Human ZNT1, in the Absence of Zinc, Determined in Outward-Facing Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn601

b:195.3
occ:1.00
OE2 A:GLU420 2.0 122.1 1.0
NE2 A:HIS370 2.2 111.3 1.0
NE2 A:HIS387 2.2 107.7 1.0
CD2 A:HIS387 2.7 107.7 1.0
CE1 A:HIS387 3.1 107.7 1.0
CD A:GLU420 3.1 122.1 1.0
CE1 A:HIS370 3.1 111.3 1.0
CD2 A:HIS370 3.1 111.3 1.0
CG A:HIS387 3.6 107.7 1.0
OE1 A:GLU420 3.7 122.1 1.0
ND1 A:HIS387 3.7 107.7 1.0
CG A:GLU420 4.2 122.1 1.0
ND1 A:HIS370 4.2 111.3 1.0
NE2 A:GLN418 4.2 94.6 1.0
CG A:HIS370 4.3 111.3 1.0
CB A:HIS387 4.7 107.7 1.0

Zinc binding site 2 out of 2 in 8zsb

Go back to Zinc Binding Sites List in 8zsb
Zinc binding site 2 out of 2 in the Cryo-Em Structure of Human ZNT1, in the Absence of Zinc, Determined in Outward-Facing Conformation


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Human ZNT1, in the Absence of Zinc, Determined in Outward-Facing Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn601

b:179.0
occ:1.00
OE2 B:GLU420 1.9 121.6 1.0
NE2 B:HIS387 2.2 106.8 1.0
NE2 B:HIS370 2.3 112.5 1.0
CD2 B:HIS387 2.7 106.8 1.0
CE1 B:HIS387 3.1 106.8 1.0
CD B:GLU420 3.1 121.6 1.0
CD2 B:HIS370 3.2 112.5 1.0
CE1 B:HIS370 3.2 112.5 1.0
CG B:HIS387 3.5 106.8 1.0
OE1 B:GLU420 3.7 121.6 1.0
ND1 B:HIS387 3.7 106.8 1.0
CG B:GLU420 4.2 121.6 1.0
CG B:HIS370 4.3 112.5 1.0
ND1 B:HIS370 4.3 112.5 1.0
NE2 B:GLN418 4.4 94.7 1.0
CB B:HIS387 4.6 106.8 1.0

Reference:

Y.Li, J.Ma, R.Wang, Y.Luo, S.Zheng, X.Wang. Zinc Transporter 1 Functions in Copper Uptake and Cuproptosis To Be Published.
Page generated: Fri Aug 22 16:15:29 2025

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