Zinc in PDB 8zm6: Crystal Structure of Thermolysin (Dose III)

All present enzymatic activity of Crystal Structure of Thermolysin (Dose III):
3.4.24.27;

The structure of Crystal Structure of Thermolysin (Dose III), PDB code: 8zm6 was solved by K.H.Nam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.18 / 1.40
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	93.141, 93.141, 128.777, 90, 90, 120
R / Rfree (%)	15.2 / 17.2

The structure of Crystal Structure of Thermolysin (Dose III) also contains other interesting chemical elements:

Calcium

(Ca)

4 atoms

The binding sites of Zinc atom in the Crystal Structure of Thermolysin (Dose III) (pdb code 8zm6). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Thermolysin (Dose III), PDB code: 8zm6:

Zinc binding site 1 out of 1 in the Crystal Structure of Thermolysin (Dose III)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Thermolysin (Dose III) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn403 b:15.2 occ:1.00 NE2 A:HIS146 2.0 11.2 1.0 NE2 A:HIS142 2.1 10.3 1.0 OE2 A:GLU166 2.1 14.4 1.0 CD A:GLU166 2.9 14.0 1.0 CE1 A:HIS146 3.0 11.4 1.0 CE1 A:HIS142 3.1 9.8 1.0 CD2 A:HIS142 3.1 9.4 1.0 OE1 A:GLU166 3.2 15.1 1.0 CD2 A:HIS146 3.2 10.6 1.0 OH A:TYR157 4.0 16.5 1.0 NE2 A:HIS231 4.2 13.2 1.0 ND1 A:HIS146 4.2 12.6 1.0 ND1 A:HIS142 4.2 10.2 1.0 CG A:HIS146 4.2 10.4 1.0 CG A:HIS142 4.2 9.6 1.0 CG A:GLU166 4.3 10.8 1.0 CA A:ILE401 4.4 14.0 1.0 OE1 A:GLU143 4.4 20.1 1.0 N A:ILE401 4.4 14.9 1.0 O A:HOH761 4.6 21.6 1.0 CB A:SER169 4.6 8.7 1.0 CD2 A:HIS231 4.8 11.9 1.0 OG A:SER169 4.8 11.1 1.0 C A:ILE401 4.8 15.1 1.0 O A:ILE401 4.8 14.3 1.0 CZ A:TYR157 4.9 15.0 1.0 CD A:GLU143 4.9 16.9 1.0 OE2 A:GLU143 5.0 21.2 1.0 CE1 A:TYR157 5.0 13.9 1.0

K.H.Nam, K.H.Nam. N/A N/A.