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Zinc in PDB 8zel: Crystal Structure of Human Cytosolic Beta-Alanyl Lysine Dipeptidase TYR314PHE Mutant with A Crystal Soaked in Beta-Alanyl Ornithine

Enzymatic activity of Crystal Structure of Human Cytosolic Beta-Alanyl Lysine Dipeptidase TYR314PHE Mutant with A Crystal Soaked in Beta-Alanyl Ornithine

All present enzymatic activity of Crystal Structure of Human Cytosolic Beta-Alanyl Lysine Dipeptidase TYR314PHE Mutant with A Crystal Soaked in Beta-Alanyl Ornithine:
3.4.13.4;

Protein crystallography data

The structure of Crystal Structure of Human Cytosolic Beta-Alanyl Lysine Dipeptidase TYR314PHE Mutant with A Crystal Soaked in Beta-Alanyl Ornithine, PDB code: 8zel was solved by K.Chandravanshi, A.Kumar, R.D.Makde, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.43 / 2.30
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 78.777, 112.894, 123.255, 90, 90, 90
R / Rfree (%) 19.4 / 23.2

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Human Cytosolic Beta-Alanyl Lysine Dipeptidase TYR314PHE Mutant with A Crystal Soaked in Beta-Alanyl Ornithine (pdb code 8zel). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Human Cytosolic Beta-Alanyl Lysine Dipeptidase TYR314PHE Mutant with A Crystal Soaked in Beta-Alanyl Ornithine, PDB code: 8zel:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 8zel

Go back to Zinc Binding Sites List in 8zel
Zinc binding site 1 out of 2 in the Crystal Structure of Human Cytosolic Beta-Alanyl Lysine Dipeptidase TYR314PHE Mutant with A Crystal Soaked in Beta-Alanyl Ornithine


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Human Cytosolic Beta-Alanyl Lysine Dipeptidase TYR314PHE Mutant with A Crystal Soaked in Beta-Alanyl Ornithine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:36.2
occ:0.50
 OE2 A:GLU165 1.9 41.9 1.0
O A:HOH606 2.1 58.0 1.0
SG A:CYS124 2.3 57.3 1.0
NE2 A:HIS377 2.3 62.8 1.0
ZN A:ZN502 2.4 37.9 0.6
CD A:GLU165 2.8 49.0 1.0
CB A:CYS124 3.0 37.8 1.0
OE1 A:GLU165 3.2 48.5 1.0
CE1 A:HIS377 3.3 64.6 1.0
CD2 A:HIS377 3.3 53.9 1.0
NE2 A:HIS126 3.7 25.6 1.0
OE1 A:GLU164 4.0 38.4 1.0
CG A:GLU165 4.2 35.7 1.0
CE1 A:HIS126 4.2 37.4 1.0
NE2 A:HIS189 4.3 48.4 1.0
ND1 A:HIS377 4.4 53.9 1.0
CG A:HIS377 4.4 65.1 1.0
CA A:CYS124 4.5 45.7 1.0
CD2 A:HIS126 4.6 33.6 1.0
O A:HOH617 4.7 45.0 1.0
CE1 A:HIS189 4.7 49.5 1.0
CD A:GLU164 4.9 45.8 1.0
CD1 A:LEU117 5.0 45.0 1.0

Zinc binding site 2 out of 2 in 8zel

Go back to Zinc Binding Sites List in 8zel
Zinc binding site 2 out of 2 in the Crystal Structure of Human Cytosolic Beta-Alanyl Lysine Dipeptidase TYR314PHE Mutant with A Crystal Soaked in Beta-Alanyl Ornithine


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Human Cytosolic Beta-Alanyl Lysine Dipeptidase TYR314PHE Mutant with A Crystal Soaked in Beta-Alanyl Ornithine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn502

b:37.9
occ:0.61
 O A:HOH606 2.1 58.0 1.0
NE2 A:HIS126 2.3 25.6 1.0
NE2 A:HIS189 2.3 48.4 1.0
SG A:CYS124 2.4 57.3 1.0
ZN A:ZN501 2.4 36.2 0.5
O A:HOH617 2.5 45.0 1.0
CE1 A:HIS189 3.1 49.5 1.0
CE1 A:HIS126 3.2 37.4 1.0
CD2 A:HIS126 3.3 33.6 1.0
CD2 A:HIS189 3.4 55.6 1.0
OE2 A:GLU165 3.4 41.9 1.0
OE1 A:GLU164 3.4 38.4 1.0
CB A:CYS124 3.8 37.8 1.0
CD A:GLU164 4.0 45.8 1.0
CD A:GLU165 4.3 49.0 1.0
OE2 A:GLU164 4.3 41.5 1.0
ND1 A:HIS189 4.3 50.8 1.0
ND1 A:HIS126 4.4 34.2 1.0
OE1 A:GLU113 4.4 38.1 1.0
CG A:HIS126 4.4 28.3 1.0
CG A:HIS189 4.5 46.9 1.0
O A:CYS124 4.6 38.2 1.0
NE2 A:HIS377 4.7 62.8 1.0
OE1 A:GLU165 4.8 48.5 1.0
CD1 A:ILE129 4.8 31.6 1.0
CG A:GLU164 5.0 34.2 1.0

Reference:

K.Chandravanshi, A.Kumar, R.D.Makde. Crystal Structure of Human Cytosolic Beta-Alanyl Lysine Dipeptidase TYR314PHE Mutant with A Crystal Soaked in Beta-Alanyl Ornithine To Be Published.
Page generated: Fri Aug 22 16:09:57 2025

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