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Zinc in PDB 8zei: Crystal Structure of Human Cytosolic Beta-Alanyl Lysine Dipeptidase with Crystal Soaked in Beta-Alanyl Histidine

Enzymatic activity of Crystal Structure of Human Cytosolic Beta-Alanyl Lysine Dipeptidase with Crystal Soaked in Beta-Alanyl Histidine

All present enzymatic activity of Crystal Structure of Human Cytosolic Beta-Alanyl Lysine Dipeptidase with Crystal Soaked in Beta-Alanyl Histidine:
3.4.13.4;

Protein crystallography data

The structure of Crystal Structure of Human Cytosolic Beta-Alanyl Lysine Dipeptidase with Crystal Soaked in Beta-Alanyl Histidine, PDB code: 8zei was solved by K.Chandravanshi, A.Kumar, R.D.Makde, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.96 / 2.30
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 79.477, 115.308, 124.1, 90, 90, 90
R / Rfree (%) 20.3 / 21.9

Other elements in 8zei:

The structure of Crystal Structure of Human Cytosolic Beta-Alanyl Lysine Dipeptidase with Crystal Soaked in Beta-Alanyl Histidine also contains other interesting chemical elements:

Sodium (Na) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Human Cytosolic Beta-Alanyl Lysine Dipeptidase with Crystal Soaked in Beta-Alanyl Histidine (pdb code 8zei). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Human Cytosolic Beta-Alanyl Lysine Dipeptidase with Crystal Soaked in Beta-Alanyl Histidine, PDB code: 8zei:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 8zei

Go back to Zinc Binding Sites List in 8zei
Zinc binding site 1 out of 2 in the Crystal Structure of Human Cytosolic Beta-Alanyl Lysine Dipeptidase with Crystal Soaked in Beta-Alanyl Histidine


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Human Cytosolic Beta-Alanyl Lysine Dipeptidase with Crystal Soaked in Beta-Alanyl Histidine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:45.2
occ:0.45
 OE2 A:GLU165 2.0 52.2 1.0
SG A:CYS124 2.3 57.8 1.0
NE2 A:HIS377 2.3 78.0 1.0
ZN A:ZN502 2.3 69.0 1.0
O A:HOH643 2.6 64.0 1.0
CD A:GLU165 2.9 64.2 1.0
OE1 A:GLU165 3.2 64.8 1.0
CE1 A:HIS377 3.2 81.1 1.0
CB A:CYS124 3.3 51.1 1.0
CD2 A:HIS377 3.3 80.2 1.0
NE2 A:HIS126 3.9 40.4 1.0
OE2 A:GLU164 4.1 53.4 1.0
CG A:GLU165 4.2 59.3 1.0
CB A:PRO348 4.2 98.3 1.0
NE2 A:HIS189 4.3 58.8 1.0
ND1 A:HIS377 4.4 87.8 1.0
CE1 A:HIS126 4.4 48.5 1.0
CG A:HIS377 4.5 75.4 1.0
CG A:PRO348 4.5 96.5 1.0
CB A:SER349 4.6 87.1 1.0
CA A:CYS124 4.6 56.3 1.0
N A:SER349 4.7 104.1 1.0
CD2 A:HIS126 4.8 42.7 1.0
CE1 A:HIS189 4.8 58.2 1.0
O A:HOH604 4.8 51.6 1.0
O A:HOH657 4.8 49.4 1.0
CE1 A:HIS503 4.8 101.9 1.0

Zinc binding site 2 out of 2 in 8zei

Go back to Zinc Binding Sites List in 8zei
Zinc binding site 2 out of 2 in the Crystal Structure of Human Cytosolic Beta-Alanyl Lysine Dipeptidase with Crystal Soaked in Beta-Alanyl Histidine


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Human Cytosolic Beta-Alanyl Lysine Dipeptidase with Crystal Soaked in Beta-Alanyl Histidine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn502

b:69.0
occ:1.00
 NE2 A:HIS189 2.3 58.8 1.0
NE2 A:HIS126 2.3 40.4 1.0
ZN A:ZN501 2.3 45.2 0.5
SG A:CYS124 2.3 57.8 1.0
O A:HOH643 2.7 64.0 1.0
O A:HOH604 2.7 51.6 1.0
CE1 A:HIS189 3.1 58.2 1.0
OE2 A:GLU165 3.2 52.2 1.0
CE1 A:HIS126 3.3 48.5 1.0
CD2 A:HIS126 3.3 42.7 1.0
CD2 A:HIS189 3.4 55.0 1.0
CB A:CYS124 3.6 51.1 1.0
OE2 A:GLU164 3.6 53.4 1.0
CD A:GLU165 4.2 64.2 1.0
CD A:GLU164 4.2 55.0 1.0
CG A:PRO348 4.3 96.5 1.0
ND1 A:HIS189 4.3 56.5 1.0
ND1 A:HIS126 4.4 48.2 1.0
CG A:HIS126 4.4 44.1 1.0
OE1 A:GLU164 4.4 54.2 1.0
CG A:HIS189 4.5 59.4 1.0
NE2 A:HIS377 4.5 78.0 1.0
OE1 A:GLU113 4.6 48.1 1.0
O A:CYS124 4.6 52.9 1.0
CB A:PRO348 4.7 98.3 1.0
CA A:CYS124 4.8 56.3 1.0
OE1 A:GLU165 4.8 64.8 1.0
CG A:GLU165 5.0 59.3 1.0
CD1 A:ILE129 5.0 46.2 1.0

Reference:

K.Chandravanshi, A.Kumar, R.D.Makde. Crystal Structure of Human Cytosolic Beta-Alanyl Lysine Dipeptidase with Crystal Soaked in Beta-Alanyl Histidine To Be Published.
Page generated: Fri Aug 22 16:09:42 2025

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