Zinc in PDB 8zaf: Crystal Structure of SKABA3 From Shimazuella Kribbensis

The structure of Crystal Structure of SKABA3 From Shimazuella Kribbensis, PDB code: 8zaf was solved by S.Y.Li, H.Li, Y.Yang, J.-W.Huang, C.-C.Chen, R.-T.Guo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.87 / 1.96
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	220.216, 107.8, 81.529, 90, 103.65, 90
R / Rfree (%)	19.6 / 22.3

The binding sites of Zinc atom in the Crystal Structure of SKABA3 From Shimazuella Kribbensis (pdb code 8zaf). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Crystal Structure of SKABA3 From Shimazuella Kribbensis, PDB code: 8zaf:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Crystal Structure of SKABA3 From Shimazuella Kribbensis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of SKABA3 From Shimazuella Kribbensis within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:54.8 occ:1.00 OG A:SER367 2.2 49.5 1.0 SG A:CYS340 2.2 53.8 1.0 SG A:CYS343 2.3 45.5 1.0 SG A:CYS364 2.4 50.5 1.0 CB A:SER367 3.1 46.0 1.0 CB A:CYS340 3.3 54.2 1.0 N A:CYS343 3.4 56.9 1.0 CB A:CYS364 3.4 45.2 1.0 CB A:CYS343 3.6 52.1 1.0 CA A:CYS343 3.8 50.6 1.0 N A:CYS364 3.9 48.8 1.0 C A:LYS342 4.0 63.5 1.0 CB A:LYS342 4.1 69.0 1.0 CA A:CYS364 4.2 52.1 1.0 CA A:SER367 4.2 53.3 1.0 N A:SER367 4.2 47.1 1.0 CA A:LYS342 4.5 63.7 1.0 CA A:CYS340 4.6 60.2 1.0 N A:LYS342 4.6 59.5 1.0 C A:CYS340 4.7 61.1 1.0 O A:CYS340 4.7 66.4 1.0 O A:LYS342 4.8 64.4 1.0 O A:CYS364 4.8 55.5 1.0 C A:CYS364 4.8 57.4 1.0 C A:LEU363 5.0 48.4 1.0

Zinc binding site 2 out of 3 in the Crystal Structure of SKABA3 From Shimazuella Kribbensis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of SKABA3 From Shimazuella Kribbensis within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn401 b:40.6 occ:1.00 SG B:CYS340 2.1 41.9 1.0 SG B:CYS364 2.1 36.0 1.0 OG B:SER367 2.4 34.6 1.0 SG B:CYS343 2.4 32.0 1.0 CB B:SER367 3.0 36.4 1.0 CB B:CYS340 3.2 43.0 1.0 N B:CYS343 3.3 33.0 1.0 CB B:CYS364 3.5 35.9 1.0 CB B:CYS343 3.6 31.1 1.0 CA B:CYS343 3.8 32.4 1.0 N B:CYS364 4.0 32.1 1.0 C B:LYS342 4.1 32.8 1.0 N B:SER367 4.1 41.2 1.0 CA B:SER367 4.1 38.7 1.0 CA B:CYS364 4.3 34.9 1.0 CB B:LYS342 4.3 41.9 1.0 CA B:CYS340 4.4 44.9 1.0 CA B:LYS342 4.5 36.2 1.0 N B:LYS342 4.5 34.3 1.0 C B:CYS340 4.5 50.0 1.0 O B:CYS340 4.6 39.0 1.0 O B:CYS364 4.7 36.4 1.0 O B:HOH582 4.8 51.1 1.0 C B:CYS364 4.8 43.3 1.0 O B:LYS342 4.8 32.1 1.0

Zinc binding site 3 out of 3 in the Crystal Structure of SKABA3 From Shimazuella Kribbensis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of SKABA3 From Shimazuella Kribbensis within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn400 b:72.9 occ:1.00 SG C:CYS343 1.9 64.7 1.0 SG C:CYS364 2.5 69.2 1.0 OG C:SER367 2.6 70.0 1.0 SG C:CYS340 2.7 81.1 1.0 CB C:CYS340 3.1 79.7 1.0 CB C:SER367 3.2 67.8 1.0 CB C:CYS343 3.3 67.3 1.0 CB C:CYS364 3.4 60.0 1.0 N C:CYS343 3.4 70.5 1.0 N C:CYS364 3.7 78.8 1.0 CA C:CYS343 3.7 71.4 1.0 CA C:CYS364 4.1 74.1 1.0 C C:LYS342 4.2 81.3 1.0 CB C:LYS342 4.3 93.1 1.0 CA C:SER367 4.4 75.6 1.0 CA C:CYS340 4.5 82.4 1.0 N C:SER367 4.5 69.9 1.0 CA C:LYS342 4.7 90.8 1.0 C C:CYS340 4.8 79.1 1.0 C C:LEU363 4.8 71.8 1.0 O C:CYS340 4.8 60.6 1.0 C C:CYS364 4.9 80.3 1.0 N C:LYS342 4.9 86.3 1.0 O C:CYS364 4.9 84.4 1.0 CA C:LEU363 5.0 71.0 1.0 O C:LYS342 5.0 79.6 1.0

S.Y.Li, H.Li, Y.Yang, J.-W.Huang, C.-C.Chen, R.-T.Guo. Crystal Structure of SKABA3 From Shimazuella Kribbensis To Be Published.