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Zinc in PDB 8zad: Crystal Structure of RUABA3 From Rutstroemia Sp. Njr-2017A WRK4

Protein crystallography data

The structure of Crystal Structure of RUABA3 From Rutstroemia Sp. Njr-2017A WRK4, PDB code: 8zad was solved by S.Y.Li, H.Li, Y.Yang, J.-W.Huang, C.-C.Chen, R.-T.Guo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.39 / 2.10
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 68.324, 141.011, 90.285, 90, 90, 90
R / Rfree (%) 16.4 / 21.2

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of RUABA3 From Rutstroemia Sp. Njr-2017A WRK4 (pdb code 8zad). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of RUABA3 From Rutstroemia Sp. Njr-2017A WRK4, PDB code: 8zad:

Zinc binding site 1 out of 1 in 8zad

Go back to Zinc Binding Sites List in 8zad
Zinc binding site 1 out of 1 in the Crystal Structure of RUABA3 From Rutstroemia Sp. Njr-2017A WRK4


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of RUABA3 From Rutstroemia Sp. Njr-2017A WRK4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn500

b:26.8
occ:1.00
SG A:CYS386 2.3 22.9 1.0
SG A:CYS389 2.3 21.9 1.0
SG A:CYS409 2.3 20.8 1.0
SG A:CYS412 2.4 23.6 1.0
CB A:CYS386 3.1 24.1 1.0
CB A:CYS412 3.3 23.4 1.0
CB A:CYS409 3.5 21.8 1.0
N A:CYS389 3.6 21.2 1.0
CB A:CYS389 3.6 22.5 1.0
N A:CYS409 3.9 22.5 1.0
CA A:CYS389 3.9 23.0 1.0
CA A:CYS409 4.3 21.9 1.0
O A:HOH948 4.3 42.5 1.0
N A:CYS412 4.3 23.0 1.0
C A:LYS388 4.3 22.1 1.0
CA A:CYS412 4.4 22.2 1.0
O A:HOH892 4.4 35.2 1.0
CB A:LYS388 4.5 25.3 1.0
CA A:CYS386 4.6 24.0 1.0
O A:HOH720 4.6 22.1 1.0
CA A:LYS388 4.8 24.1 1.0
N A:LYS388 4.8 24.1 1.0
C A:CYS409 4.9 24.1 1.0
O A:CYS409 4.9 20.6 1.0
C A:CYS386 5.0 25.2 1.0
C A:LEU408 5.0 20.9 1.0

Reference:

S.Y.Li, H.Li, Y.Yang, J.-W.Huang, C.-C.Chen, R.-T.Guo. Crystal Structure of RUABA3 From Rutstroemia Sp. Njr-2017A WRK4 To Be Published.
Page generated: Sun Dec 15 12:15:28 2024

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