Zinc in PDB 8yqz: African Swine Fever Virus Rna Polymerase--Dna Complex

All present enzymatic activity of African Swine Fever Virus Rna Polymerase--Dna Complex:
2.7.7.6;

The structure of African Swine Fever Virus Rna Polymerase--Dna Complex also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Zinc atom in the African Swine Fever Virus Rna Polymerase--Dna Complex (pdb code 8yqz). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the African Swine Fever Virus Rna Polymerase--Dna Complex, PDB code: 8yqz:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the African Swine Fever Virus Rna Polymerase--Dna Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of African Swine Fever Virus Rna Polymerase--Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1502 b:64.8 occ:1.00 SG A:CYS62 2.3 33.9 1.0 SG A:CYS69 2.3 32.5 1.0 NE2 A:HIS72 2.3 25.6 1.0 SG A:CYS59 2.5 32.5 1.0 CD2 A:HIS72 3.0 22.1 1.0 CB A:CYS59 3.2 27.1 1.0 CE1 A:HIS72 3.5 23.8 1.0 CB A:CYS69 3.5 29.3 1.0 CB A:CYS62 3.6 27.0 1.0 N A:CYS62 4.0 29.7 1.0 CA A:CYS69 4.2 31.0 1.0 CG A:HIS72 4.2 22.3 1.0 CA A:GLY51 4.3 28.8 1.0 CA A:CYS62 4.4 28.8 1.0 ND1 A:HIS72 4.4 24.4 1.0 N A:GLY71 4.5 25.0 1.0 CB A:THR61 4.6 27.9 1.0 N A:GLY51 4.7 31.5 1.0 CA A:CYS59 4.7 29.4 1.0 N A:MET70 4.7 26.3 1.0 C A:CYS69 4.8 33.1 1.0 CA A:GLY71 4.8 24.3 1.0

Zinc binding site 2 out of 4 in the African Swine Fever Virus Rna Polymerase--Dna Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of African Swine Fever Virus Rna Polymerase--Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1301 b:66.8 occ:1.00 SG B:CYS1183 2.2 25.5 1.0 SG B:CYS1180 2.3 33.9 1.0 SG B:CYS1201 2.3 45.1 1.0 SG B:CYS1198 2.7 44.1 1.0 CB B:CYS1180 3.0 17.3 1.0 CB B:CYS1183 3.3 21.9 1.0 CB B:CYS1201 3.5 39.1 1.0 N B:CYS1183 3.6 20.5 1.0 CB B:CYS1198 3.8 33.5 1.0 CA B:CYS1183 4.0 21.6 1.0 N B:CYS1201 4.1 39.1 1.0 CB B:ASN1182 4.3 26.0 1.0 C B:ASN1182 4.4 23.2 1.0 CA B:CYS1180 4.4 12.9 1.0 CA B:CYS1201 4.4 38.5 1.0 N B:ASN1182 4.6 22.3 1.0 CB B:ASN1200 4.6 39.8 1.0 CA B:ASN1182 4.6 21.4 1.0 C B:CYS1180 4.8 14.8 1.0 C B:ASN1200 4.9 44.5 1.0 O B:CYS1180 4.9 17.4 1.0 C B:CYS1183 5.0 26.3 1.0

Zinc binding site 3 out of 4 in the African Swine Fever Virus Rna Polymerase--Dna Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of African Swine Fever Virus Rna Polymerase--Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ G:Zn201 b:76.2 occ:1.00 SG G:CYS98 2.3 44.8 1.0 SG G:CYS96 2.3 42.5 1.0 SG G:CYS76 2.3 46.7 1.0 SG G:CYS73 2.6 48.1 1.0 CB G:CYS96 3.2 32.9 1.0 CB G:CYS76 3.3 40.6 1.0 CB G:CYS98 3.4 33.3 1.0 CB G:CYS73 3.6 38.5 1.0 N G:CYS76 3.6 40.8 1.0 CA G:CYS76 4.0 42.0 1.0 N G:CYS98 4.2 35.9 1.0 CB G:TYR100 4.3 34.4 1.0 CB G:ASN75 4.3 41.0 1.0 CA G:CYS98 4.4 32.2 1.0 CA G:CYS96 4.6 29.1 1.0 C G:ASN75 4.6 44.5 1.0 C G:CYS76 4.7 40.3 1.0 CB G:LEU78 4.8 37.2 1.0 CA G:ASN75 4.9 42.9 1.0 N G:ASN75 4.9 43.1 1.0 N G:ARG97 4.9 33.5 1.0 N G:HIS77 4.9 42.0 1.0 N G:TYR100 4.9 36.5 1.0 C G:CYS96 5.0 31.0 1.0 CA G:CYS73 5.0 39.2 1.0

Zinc binding site 4 out of 4 in the African Swine Fever Virus Rna Polymerase--Dna Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of African Swine Fever Virus Rna Polymerase--Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ H:Zn101 b:37.4 occ:1.00 SG H:CYS10 2.3 6.5 1.0 SG H:CYS7 2.3 5.2 1.0 SG H:CYS66 2.3 9.7 1.0 SG H:CYS65 2.3 4.7 1.0 CB H:CYS7 3.1 6.8 1.0 N H:CYS66 3.3 12.1 1.0 CB H:CYS10 3.4 13.0 1.0 CB H:CYS65 3.4 15.8 1.0 CB H:CYS66 3.6 1.2 1.0 CA H:CYS66 3.7 10.9 1.0 N H:CYS10 3.8 7.4 1.0 C H:CYS65 3.9 0.0 1.0 NE H:ARG63 4.1 3.2 1.0 CA H:CYS10 4.2 5.7 1.0 CA H:CYS65 4.2 3.7 1.0 O H:CYS65 4.6 13.6 1.0 CA H:CYS7 4.6 8.0 1.0 CD H:ARG63 4.7 5.2 1.0 CB H:THR9 4.7 2.1 1.0 CB H:PHE12 4.7 3.4 1.0 CB H:ARG63 4.8 5.5 1.0 N H:CYS65 4.8 3.1 1.0 N H:GLY11 4.8 0.0 1.0 C H:THR9 4.9 3.8 1.0 C H:CYS10 4.9 2.3 1.0 N H:PHE12 4.9 4.1 1.0

X.Y.Feng, X.Y.Feng. N/A N/A.