Zinc in PDB 8yqv: African Swine Fever Virus Rna Polymerase Core

All present enzymatic activity of African Swine Fever Virus Rna Polymerase Core:
2.7.7.6;

The structure of African Swine Fever Virus Rna Polymerase Core also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Zinc atom in the African Swine Fever Virus Rna Polymerase Core (pdb code 8yqv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the African Swine Fever Virus Rna Polymerase Core, PDB code: 8yqv:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the African Swine Fever Virus Rna Polymerase Core


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of African Swine Fever Virus Rna Polymerase Core within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1502 b:124.3 occ:1.00 NE2 A:HIS72 2.1 82.9 1.0 SG A:CYS62 2.3 89.1 1.0 SG A:CYS69 2.3 79.9 1.0 SG A:CYS59 2.3 92.8 1.0 CD2 A:HIS72 2.8 80.3 1.0 CB A:CYS59 3.1 85.5 1.0 CE1 A:HIS72 3.3 80.8 1.0 CB A:CYS69 3.6 81.1 1.0 CB A:CYS62 3.6 88.5 1.0 N A:CYS62 3.8 84.2 1.0 CG A:HIS72 4.0 78.1 1.0 CA A:GLY51 4.1 90.1 1.0 ND1 A:HIS72 4.2 80.8 1.0 CA A:CYS69 4.3 80.5 1.0 CA A:CYS62 4.3 86.6 1.0 CB A:THR61 4.5 84.7 1.0 CA A:CYS59 4.5 87.1 1.0 N A:GLY71 4.6 79.7 1.0 N A:GLY51 4.6 87.3 1.0 N A:MET70 4.9 78.7 1.0 CA A:GLY71 4.9 77.1 1.0 C A:THR61 4.9 85.9 1.0 C A:CYS69 4.9 82.8 1.0 C A:CYS62 5.0 89.4 1.0

Zinc binding site 2 out of 4 in the African Swine Fever Virus Rna Polymerase Core


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of African Swine Fever Virus Rna Polymerase Core within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1301 b:116.1 occ:1.00 SG B:CYS1183 2.3 74.2 1.0 SG B:CYS1198 2.3 95.2 1.0 SG B:CYS1180 2.3 72.9 1.0 SG B:CYS1201 2.3 106.0 1.0 CB B:CYS1180 2.9 63.3 1.0 CB B:CYS1198 3.4 92.7 1.0 CB B:CYS1183 3.5 69.4 1.0 CB B:CYS1201 3.6 102.3 1.0 N B:CYS1201 4.0 100.7 1.0 N B:CYS1183 4.1 65.7 1.0 CB B:ASN1200 4.2 95.5 1.0 CA B:CYS1183 4.4 68.3 1.0 CA B:CYS1180 4.4 59.0 1.0 CA B:CYS1201 4.4 104.1 1.0 C B:ASN1200 4.5 94.2 1.0 CB B:ASN1182 4.7 73.9 1.0 C B:ASN1182 4.7 73.7 1.0 CA B:ASN1200 4.8 97.2 1.0 ND2 B:ASN1200 4.8 98.1 1.0 CA B:CYS1198 4.8 93.9 1.0 N B:ASN1200 4.9 101.2 1.0 N B:ASN1182 4.9 71.4 1.0 C B:CYS1180 4.9 65.6 1.0 CA B:ALA1205 4.9 89.2 1.0

Zinc binding site 3 out of 4 in the African Swine Fever Virus Rna Polymerase Core


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of African Swine Fever Virus Rna Polymerase Core within 5.0Å range: probe atom residue distance (Å) B Occ H:Zn101 b:81.9 occ:1.00 SG H:CYS10 2.3 65.1 1.0 SG H:CYS66 2.3 55.9 1.0 SG H:CYS7 2.3 52.9 1.0 SG H:CYS65 2.3 48.6 1.0 CB H:CYS7 3.1 25.4 1.0 N H:CYS66 3.2 45.2 1.0 CB H:CYS10 3.4 48.7 1.0 CB H:CYS65 3.4 43.4 1.0 CB H:CYS66 3.5 41.1 1.0 CA H:CYS66 3.6 35.8 1.0 C H:CYS65 3.8 42.3 1.0 N H:CYS10 3.8 44.4 1.0 NE H:ARG63 4.1 50.7 1.0 CA H:CYS10 4.1 42.7 1.0 CA H:CYS65 4.1 34.7 1.0 O H:CYS65 4.6 56.0 1.0 CA H:CYS7 4.6 33.5 1.0 CD H:ARG63 4.6 47.8 1.0 CB H:THR9 4.6 54.9 1.0 N H:GLY11 4.7 40.3 1.0 CB H:PHE12 4.7 38.7 1.0 CB H:ARG63 4.7 53.0 1.0 N H:CYS65 4.7 48.2 1.0 C H:CYS10 4.8 50.6 1.0 C H:THR9 4.8 50.9 1.0 N H:PHE12 4.9 38.8 1.0

Zinc binding site 4 out of 4 in the African Swine Fever Virus Rna Polymerase Core


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of African Swine Fever Virus Rna Polymerase Core within 5.0Å range: probe atom residue distance (Å) B Occ G:Zn201 b:139.2 occ:1.00 SG G:CYS76 2.3 123.3 1.0 SG G:CYS98 2.3 111.8 1.0 SG G:CYS96 2.3 102.0 1.0 SG G:CYS73 2.3 118.6 1.0 CB G:CYS96 3.1 95.7 1.0 CB G:CYS98 3.3 106.4 1.0 CB G:CYS76 3.4 120.3 1.0 CB G:CYS73 3.5 111.2 1.0 N G:CYS76 3.6 121.8 1.0 CA G:CYS76 4.1 121.0 1.0 N G:CYS98 4.2 106.8 1.0 CB G:TYR100 4.3 114.2 1.0 CA G:CYS98 4.4 107.3 1.0 CB G:ASN75 4.4 122.8 1.0 CB G:LEU78 4.5 107.3 1.0 CA G:CYS96 4.5 94.5 1.0 C G:CYS76 4.7 122.9 1.0 C G:ASN75 4.7 124.3 1.0 N G:HIS77 4.8 119.7 1.0 C G:CYS96 4.8 97.3 1.0 CD2 G:LEU81 4.8 83.2 1.0 CA G:CYS73 4.9 111.0 1.0 N G:ARG97 4.9 92.0 1.0 N G:ASN75 4.9 122.9 1.0 CA G:ASN75 4.9 123.2 1.0 N G:LEU78 5.0 110.0 1.0 CD2 G:LEU78 5.0 105.1 1.0

X.Y.Feng, X.Y.Feng. N/A N/A.