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Zinc in PDB 8yqu: African Swine Fever Virus Rna Polymerase-M1249L COMPLEX1

Enzymatic activity of African Swine Fever Virus Rna Polymerase-M1249L COMPLEX1

All present enzymatic activity of African Swine Fever Virus Rna Polymerase-M1249L COMPLEX1:
2.7.7.6;

Other elements in 8yqu:

The structure of African Swine Fever Virus Rna Polymerase-M1249L COMPLEX1 also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the African Swine Fever Virus Rna Polymerase-M1249L COMPLEX1 (pdb code 8yqu). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 9 binding sites of Zinc where determined in the African Swine Fever Virus Rna Polymerase-M1249L COMPLEX1, PDB code: 8yqu:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Zinc binding site 1 out of 9 in 8yqu

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Zinc binding site 1 out of 9 in the African Swine Fever Virus Rna Polymerase-M1249L COMPLEX1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of African Swine Fever Virus Rna Polymerase-M1249L COMPLEX1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2002

b:87.6
occ:1.00
 NE2 A:HIS72 2.1 52.5 1.0
SG A:CYS62 2.3 49.4 1.0
SG A:CYS59 2.3 63.6 1.0
SG A:CYS69 2.3 54.4 1.0
CD2 A:HIS72 3.0 52.3 1.0
CB A:CYS59 3.0 44.3 1.0
CE1 A:HIS72 3.1 48.5 1.0
CB A:CYS69 3.4 51.4 1.0
CB A:CYS62 3.6 43.5 1.0
N A:CYS62 3.9 47.1 1.0
CG A:HIS72 4.1 49.8 1.0
ND1 A:HIS72 4.1 46.7 1.0
CA A:GLY51 4.1 49.1 1.0
CA A:CYS69 4.2 44.5 1.0
CA A:CYS62 4.3 43.6 1.0
CA A:CYS59 4.5 46.4 1.0
N A:GLY71 4.5 45.4 1.0
CB A:THR61 4.6 44.9 1.0
N A:GLY51 4.7 47.9 1.0
C A:CYS69 4.8 49.1 1.0
N A:MET70 4.8 42.8 1.0
CA A:GLY71 4.9 39.8 1.0
C A:THR61 5.0 47.7 1.0

Zinc binding site 2 out of 9 in 8yqu

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Zinc binding site 2 out of 9 in the African Swine Fever Virus Rna Polymerase-M1249L COMPLEX1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of African Swine Fever Virus Rna Polymerase-M1249L COMPLEX1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2003

b:153.3
occ:1.00
 SG A:CYS102 2.3 86.2 1.0
SG A:CYS134 2.3 98.2 1.0
SG A:CYS99 2.3 87.1 1.0
SG A:CYS137 2.3 100.9 1.0
CB A:CYS134 2.9 96.0 1.0
CB A:CYS99 3.0 80.4 1.0
CB A:CYS102 3.4 77.8 1.0
CB A:CYS137 3.6 95.4 1.0
N A:CYS102 3.9 80.8 1.0
CA A:CYS102 4.2 80.8 1.0
N A:CYS137 4.2 97.3 1.0
CA A:CYS134 4.4 94.0 1.0
CA A:CYS137 4.5 96.1 1.0
CB A:ALA139 4.5 89.0 1.0
CA A:CYS99 4.5 80.2 1.0
CG2 A:VAL136 4.5 96.2 1.0
C A:ASN101 4.8 77.8 1.0
N A:GLY103 4.9 75.6 1.0
C A:CYS102 4.9 82.4 1.0
CB A:ASN101 4.9 75.6 1.0
N A:ALA139 5.0 91.6 1.0
N A:ASN101 5.0 76.0 1.0
C A:CYS137 5.0 96.1 1.0

Zinc binding site 3 out of 9 in 8yqu

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Zinc binding site 3 out of 9 in the African Swine Fever Virus Rna Polymerase-M1249L COMPLEX1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of African Swine Fever Virus Rna Polymerase-M1249L COMPLEX1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1301

b:93.0
occ:1.00
 SG B:CYS1198 2.3 67.1 1.0
SG B:CYS1180 2.3 57.1 1.0
SG B:CYS1183 2.3 61.6 1.0
SG B:CYS1201 2.3 71.2 1.0
CB B:CYS1180 3.1 35.1 1.0
CB B:CYS1198 3.3 62.1 1.0
CB B:CYS1201 3.7 73.9 1.0
CB B:CYS1183 3.8 45.4 1.0
N B:CYS1201 4.1 70.0 1.0
N B:CYS1183 4.2 39.5 1.0
CA B:ALA1205 4.5 51.7 1.0
CA B:CYS1201 4.5 75.3 1.0
CA B:CYS1180 4.5 34.8 1.0
CB B:ALA1205 4.6 46.8 1.0
CA B:CYS1183 4.6 41.8 1.0
CA B:CYS1198 4.6 61.9 1.0
CB B:ASN1200 4.6 61.9 1.0
CB B:ASN1182 4.7 50.5 1.0
O B:CYS1198 4.8 67.8 1.0
C B:CYS1198 4.9 65.5 1.0
C B:ASN1200 4.9 68.4 1.0
N B:ASN1200 5.0 71.3 1.0

Zinc binding site 4 out of 9 in 8yqu

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Zinc binding site 4 out of 9 in the African Swine Fever Virus Rna Polymerase-M1249L COMPLEX1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of African Swine Fever Virus Rna Polymerase-M1249L COMPLEX1 within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Zn101

b:80.4
occ:1.00
 SG H:CYS10 2.3 43.4 1.0
SG H:CYS66 2.3 47.0 1.0
SG H:CYS65 2.3 30.2 1.0
SG H:CYS7 2.3 38.0 1.0
CB H:CYS7 3.1 11.8 1.0
N H:CYS66 3.3 28.8 1.0
CB H:CYS65 3.5 23.3 1.0
CB H:CYS66 3.6 25.4 1.0
CA H:CYS66 3.6 19.2 1.0
CB H:CYS10 3.7 24.7 1.0
C H:CYS65 3.9 32.5 1.0
N H:CYS10 3.9 18.9 1.0
NE H:ARG63 4.0 41.7 1.0
CA H:CYS65 4.2 21.7 1.0
CA H:CYS10 4.4 22.6 1.0
CB H:THR9 4.5 28.2 1.0
CA H:CYS7 4.6 22.8 1.0
O H:CYS65 4.6 37.1 1.0
CD H:ARG63 4.7 37.0 1.0
N H:GLY11 4.7 27.7 1.0
CB H:PHE12 4.7 19.9 1.0
CB H:ARG63 4.8 35.7 1.0
N H:CYS65 4.8 28.9 1.0
N H:PHE12 4.8 23.6 1.0
NH2 H:ARG63 4.8 33.9 1.0
CZ H:ARG63 4.9 34.7 1.0
CG2 H:THR9 4.9 33.8 1.0
C H:THR9 4.9 25.8 1.0
C H:CYS10 5.0 32.6 1.0

Zinc binding site 5 out of 9 in 8yqu

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Zinc binding site 5 out of 9 in the African Swine Fever Virus Rna Polymerase-M1249L COMPLEX1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of African Swine Fever Virus Rna Polymerase-M1249L COMPLEX1 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Zn201

b:132.5
occ:1.00
 SG G:CYS76 2.3 72.7 1.0
SG G:CYS96 2.3 71.6 1.0
SG G:CYS98 2.3 69.7 1.0
SG G:CYS73 2.3 67.5 1.0
CB G:CYS96 3.2 53.2 1.0
CB G:CYS73 3.3 63.3 1.0
CB G:CYS98 3.4 64.5 1.0
CB G:CYS76 3.6 72.3 1.0
N G:CYS76 3.9 70.1 1.0
N G:CYS98 4.1 60.8 1.0
CA G:CYS76 4.3 71.1 1.0
CA G:CYS98 4.3 61.4 1.0
CB G:TYR100 4.4 55.6 1.0
CB G:ASN75 4.5 70.3 1.0
CA G:CYS96 4.6 51.7 1.0
CA G:CYS73 4.7 64.9 1.0
N G:ARG97 4.8 51.3 1.0
CB G:LEU78 4.8 57.3 1.0
C G:CYS96 4.8 54.5 1.0
C G:ASN75 4.9 69.7 1.0
C G:CYS76 5.0 71.0 1.0

Zinc binding site 6 out of 9 in 8yqu

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Zinc binding site 6 out of 9 in the African Swine Fever Virus Rna Polymerase-M1249L COMPLEX1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of African Swine Fever Virus Rna Polymerase-M1249L COMPLEX1 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Zn202

b:135.6
occ:1.00
 SG G:CYS24 2.3 77.3 1.0
SG G:CYS7 2.3 77.8 1.0
SG G:CYS26 2.3 88.7 1.0
SG G:CYS4 2.3 72.8 1.0
CB G:CYS4 3.1 69.8 1.0
CB G:CYS24 3.3 79.8 1.0
CB G:CYS26 3.5 82.4 1.0
CB G:CYS7 3.8 69.9 1.0
N G:CYS7 4.0 68.6 1.0
N G:CYS26 4.2 81.9 1.0
CA G:CYS26 4.4 83.8 1.0
CA G:CYS7 4.5 65.5 1.0
CB G:GLU28 4.5 79.7 1.0
CB G:ALA6 4.6 69.8 1.0
CA G:CYS4 4.6 66.5 1.0
CA G:CYS24 4.7 76.4 1.0
CB G:SER9 4.7 68.7 1.0
N G:SER25 4.8 79.6 1.0
CD1 J:TYR1078 4.8 74.4 1.0
OG G:SER9 5.0 68.7 1.0
C G:CYS7 5.0 66.7 1.0

Zinc binding site 7 out of 9 in 8yqu

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Zinc binding site 7 out of 9 in the African Swine Fever Virus Rna Polymerase-M1249L COMPLEX1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of African Swine Fever Virus Rna Polymerase-M1249L COMPLEX1 within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Zn1301

b:112.8
occ:1.00
 ND1 J:HIS943 2.1 70.9 1.0
SG J:CYS953 2.3 89.0 1.0
SG J:CYS950 2.3 90.1 1.0
SG J:CYS937 2.3 78.0 1.0
CE1 J:HIS943 2.5 69.6 1.0
CB J:CYS950 3.2 88.2 1.0
CG J:HIS943 3.4 70.1 1.0
CB J:CYS937 3.6 64.6 1.0
CB J:CYS953 3.6 84.1 1.0
N J:CYS953 3.7 85.0 1.0
NE2 J:HIS943 3.8 71.2 1.0
CB J:HIS943 4.1 70.4 1.0
CA J:CYS953 4.2 85.2 1.0
CD2 J:HIS943 4.2 70.3 1.0
CA J:HIS943 4.2 71.8 1.0
CA J:CYS937 4.3 65.0 1.0
CB J:LYS952 4.4 79.4 1.0
CD J:PRO938 4.5 74.3 1.0
CB J:LEU955 4.6 78.6 1.0
C J:LYS952 4.7 81.0 1.0
CA J:CYS950 4.7 88.1 1.0
C J:CYS953 4.8 85.1 1.0
OH J:TYR973 4.8 77.7 1.0
N J:LYS952 4.8 80.8 1.0
CA J:LYS952 4.9 79.3 1.0
O J:CYS953 5.0 85.6 1.0
N J:ASP944 5.0 83.9 1.0

Zinc binding site 8 out of 9 in 8yqu

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Zinc binding site 8 out of 9 in the African Swine Fever Virus Rna Polymerase-M1249L COMPLEX1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of African Swine Fever Virus Rna Polymerase-M1249L COMPLEX1 within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Zn1302

b:91.0
occ:1.00
 SG J:CYS901 2.3 70.4 1.0
SG J:CYS898 2.3 71.3 1.0
ND1 J:HIS857 2.3 52.5 1.0
CE1 J:HIS857 3.0 54.7 1.0
CB J:CYS898 3.4 59.0 1.0
CB J:CYS901 3.4 71.5 1.0
CG J:HIS857 3.4 47.0 1.0
N J:CYS901 3.5 66.3 1.0
CA J:HIS857 3.6 54.4 1.0
CB J:HIS857 3.9 49.0 1.0
CB J:VAL900 4.0 62.0 1.0
O J:PRO856 4.0 53.9 1.0
CA J:CYS901 4.0 65.3 1.0
NE2 J:HIS857 4.1 54.1 1.0
CB J:ASP851 4.2 58.7 1.0
N J:HIS857 4.3 54.4 1.0
CD2 J:HIS857 4.3 49.4 1.0
C J:PRO856 4.4 46.4 1.0
N J:LYS858 4.4 51.0 1.0
CG J:ASP851 4.5 63.4 1.0
C J:VAL900 4.5 60.9 1.0
CG1 J:VAL900 4.5 64.2 1.0
C J:HIS857 4.6 55.1 1.0
CA J:VAL900 4.6 61.8 1.0
OD2 J:ASP851 4.6 62.9 1.0
N J:VAL900 4.7 67.4 1.0
CA J:CYS898 4.8 63.5 1.0
CG2 J:VAL900 4.9 59.0 1.0
C J:CYS901 4.9 67.2 1.0
O J:LEU855 4.9 58.5 1.0

Zinc binding site 9 out of 9 in 8yqu

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Zinc binding site 9 out of 9 in the African Swine Fever Virus Rna Polymerase-M1249L COMPLEX1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of African Swine Fever Virus Rna Polymerase-M1249L COMPLEX1 within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Zn1303

b:137.9
occ:1.00
 ND1 J:HIS403 2.3 89.7 1.0
SG J:CYS442 2.3 102.3 1.0
SG J:CYS401 2.3 90.5 1.0
CE1 J:HIS403 2.8 87.4 1.0
CB J:CYS442 3.1 96.3 1.0
CG J:HIS403 3.1 88.4 1.0
CB J:CYS445 3.2 104.2 1.0
CB J:CYS401 3.2 88.8 1.0
N J:CYS445 3.7 103.4 1.0
CB J:HIS403 3.7 86.5 1.0
NE2 J:HIS403 3.8 85.2 1.0
CD2 J:HIS403 3.9 85.0 1.0
CA J:CYS445 4.0 103.5 1.0
CB J:ALA444 4.2 95.7 1.0
C J:ALA444 4.5 99.1 1.0
CA J:CYS442 4.5 96.9 1.0
N J:HIS403 4.5 85.7 1.0
SG J:CYS445 4.6 107.4 1.0
CA J:CYS401 4.7 90.2 1.0
CA J:ALA444 4.8 97.3 1.0
CA J:HIS403 4.8 87.0 1.0
N J:ALA444 4.8 97.2 1.0
N J:GLY446 4.9 99.4 1.0
C J:CYS442 4.9 97.8 1.0
ND2 J:ASN399 5.0 93.3 1.0

Reference:

X.Y.Feng, X.Y.Feng. N/A N/A.
Page generated: Wed Nov 13 13:55:43 2024

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