Zinc in PDB 8xkv: Cryo-Em Structure of the YCF2-Ftshi Motor Complex From Arabidopsis in Apo State

All present enzymatic activity of Cryo-Em Structure of the YCF2-Ftshi Motor Complex From Arabidopsis in Apo State:
1.1.1.37;

The binding sites of Zinc atom in the Cryo-Em Structure of the YCF2-Ftshi Motor Complex From Arabidopsis in Apo State (pdb code 8xkv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Cryo-Em Structure of the YCF2-Ftshi Motor Complex From Arabidopsis in Apo State, PDB code: 8xkv:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Cryo-Em Structure of the YCF2-Ftshi Motor Complex From Arabidopsis in Apo State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of the YCF2-Ftshi Motor Complex From Arabidopsis in Apo State within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1101 b:261.3 occ:1.00 CE1 B:HIS773 1.3 244.5 1.0 ND1 B:HIS773 2.3 242.8 1.0 NE2 B:HIS769 2.3 225.1 1.0 NE2 B:HIS773 2.3 244.3 1.0 OD2 B:ASP849 2.4 240.8 1.0 CD2 B:HIS769 2.8 226.1 1.0 CG B:ASP849 3.2 241.5 1.0 CG B:HIS773 3.4 244.2 1.0 CD2 B:HIS773 3.4 244.1 1.0 OD1 B:ASP849 3.4 243.6 1.0 CE1 B:HIS769 3.5 218.8 1.0 CA B:GLY830 4.0 216.6 1.0 CG B:HIS769 4.1 220.8 1.0 O B:ALA827 4.2 232.1 1.0 N B:GLY830 4.3 218.6 1.0 ND1 B:HIS769 4.4 218.5 1.0 CB B:ASP849 4.6 240.7 1.0 CB B:HIS773 4.7 245.3 1.0 N B:ARG831 4.9 204.5 1.0 C B:GLY830 4.9 207.7 1.0 O B:HIS769 4.9 227.2 1.0

Zinc binding site 2 out of 3 in the Cryo-Em Structure of the YCF2-Ftshi Motor Complex From Arabidopsis in Apo State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of the YCF2-Ftshi Motor Complex From Arabidopsis in Apo State within 5.0Å range: probe atom residue distance (Å) B Occ R:Zn400 b:450.2 occ:1.00 SG R:CYS99 2.3 512.1 1.0 SG R:CYS102 2.3 440.4 1.0 SG R:CYS179 2.3 446.9 1.0 CB R:CYS99 2.5 512.8 1.0 OG1 R:THR101 2.7 451.0 1.0 N R:CYS102 3.2 442.1 1.0 CB R:CYS179 3.3 431.7 1.0 CB R:CYS102 3.5 435.1 1.0 SG R:CYS182 3.8 480.0 1.0 CB R:THR101 3.8 451.2 1.0 CA R:CYS102 3.8 440.5 1.0 N R:THR101 3.9 446.4 1.0 CA R:CYS99 4.0 513.2 1.0 CG2 R:THR101 4.0 455.5 1.0 C R:THR101 4.1 445.1 1.0 CA R:THR101 4.2 447.3 1.0 N R:LYS100 4.4 419.4 1.0 C R:CYS102 4.4 452.4 1.0 C R:CYS99 4.4 504.3 1.0 N R:ASN103 4.5 484.2 1.0 OE1 R:GLU181 4.6 551.8 1.0 CA R:CYS179 4.7 432.4 1.0 N R:GLY104 4.8 479.2 1.0 N R:CYS99 4.8 514.0 1.0 CB R:CYS182 4.8 478.8 1.0 N R:CYS182 4.9 491.6 1.0 C R:LYS100 5.0 408.6 1.0

Zinc binding site 3 out of 3 in the Cryo-Em Structure of the YCF2-Ftshi Motor Complex From Arabidopsis in Apo State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Cryo-Em Structure of the YCF2-Ftshi Motor Complex From Arabidopsis in Apo State within 5.0Å range: probe atom residue distance (Å) B Occ R:Zn401 b:461.6 occ:1.00 SG R:CYS113 2.3 340.6 1.0 SG R:CYS110 2.3 366.6 1.0 SG R:CYS168 2.3 381.2 1.0 SG R:CYS171 2.3 403.8 1.0 CB R:CYS168 3.0 375.2 1.0 CB R:CYS113 3.2 334.4 1.0 CB R:CYS171 3.2 400.2 1.0 OG1 R:THR170 3.3 396.2 1.0 CB R:CYS110 3.3 363.1 1.0 N R:CYS171 3.8 402.1 1.0 CA R:CYS171 4.1 403.4 1.0 N R:CYS113 4.1 333.4 1.0 CA R:CYS113 4.3 330.9 1.0 CA R:CYS168 4.4 372.8 1.0 O R:CYS168 4.4 383.2 1.0 O R:CYS110 4.5 350.7 1.0 C R:THR170 4.6 399.3 1.0 C R:CYS168 4.6 379.0 1.0 CB R:THR170 4.6 398.2 1.0 CA R:CYS110 4.6 358.5 1.0 CA R:GLY175 4.8 374.4 1.0 C R:CYS110 4.9 352.3 1.0 N R:THR170 4.9 394.9 1.0 CA R:THR170 4.9 398.0 1.0 C R:CYS171 5.0 407.3 1.0 CA R:GLY117 5.0 334.6 1.0

K.Liang, Z.Jin, X.Zhan, Y.Li, Q.Xu, Y.Xie, Y.Yang, S.Wang, J.Wu, Z.Yan. Structural Insights Into the Chloroplast Protein Import in Land Plants. Cell 2024.
ISSN: ISSN 1097-4172
PubMed: 39197452
DOI: 10.1016/J.CELL.2024.08.003